Literature DB >> 21865075

Dynamic coupling between the motors of DNA replication: hexameric helicase, DNA polymerase, and primase.

Smita S Patel1, Manjula Pandey, Divya Nandakumar.   

Abstract

Helicases are molecular motor proteins that couple NTP hydrolysis to directional movement along nucleic acids. A class of helicases characterized by their ring-shaped hexameric structures translocate processively and unidirectionally along single-stranded (ss) DNA to separate the strands of double-stranded (ds) DNA, aiding both in the initiation and fork progression during DNA replication. These replicative ring-shaped helicases are found from virus to human. We review recent biochemical and structural studies that have expanded our understanding on how hexameric helicases use the NTPase reaction to translocate on ssDNA, unwind dsDNA, and how their physical and functional interactions with the DNA polymerase and primase enzymes coordinate replication of the two strands of dsDNA.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21865075      PMCID: PMC3189298          DOI: 10.1016/j.cbpa.2011.08.003

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  75 in total

1.  Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase.

Authors:  K D Raney; T E Carver; S J Benkovic
Journal:  J Biol Chem       Date:  1996-06-14       Impact factor: 5.157

2.  A coupled complex of T4 DNA replication helicase (gp41) and polymerase (gp43) can perform rapid and processive DNA strand-displacement synthesis.

Authors:  F Dong; S E Weitzel; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

3.  DNA is bound within the central hole to one or two of the six subunits of the T7 DNA helicase.

Authors:  X Yu; M M Hingorani; S S Patel; E H Egelman
Journal:  Nat Struct Biol       Date:  1996-09

4.  Complex of Escherichia coli primary replicative helicase DnaB protein with a replication fork: recognition and structure.

Authors:  M J Jezewska; S Rajendran; W Bujalowski
Journal:  Biochemistry       Date:  1998-03-03       Impact factor: 3.162

5.  Interactions of Escherichia coli primary replicative helicase DnaB protein with single-stranded DNA. The nucleic acid does not wrap around the protein hexamer.

Authors:  W Bujalowski; M J Jezewska
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

6.  Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement.

Authors:  S Kim; H G Dallmann; C S McHenry; K J Marians
Journal:  Cell       Date:  1996-02-23       Impact factor: 41.582

7.  Interaction of DNA polymerase and DNA helicase within the bacteriophage T4 DNA replication complex. Leading strand synthesis by the T4 DNA polymerase mutant A737V (tsL141) requires the T4 gene 59 helicase assembly protein.

Authors:  P Spacciapoli; N G Nossal
Journal:  J Biol Chem       Date:  1994-01-07       Impact factor: 5.157

8.  A hexameric helicase encircles one DNA strand and excludes the other during DNA unwinding.

Authors:  K J Hacker; K A Johnson
Journal:  Biochemistry       Date:  1997-11-18       Impact factor: 3.162

9.  Asymmetric interactions of hexameric bacteriophage T7 DNA helicase with the 5'- and 3'-tails of the forked DNA substrate.

Authors:  P Ahnert; S S Patel
Journal:  J Biol Chem       Date:  1997-12-19       Impact factor: 5.157

10.  Opening of nucleic-acid double strands by helicases: active versus passive opening.

Authors:  M D Betterton; Frank Jülicher
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-01-19
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  40 in total

1.  Energy-independent helicase activity of a viral genome packaging motor.

Authors:  Jenny R Chang; Benjamin T Andrews; Carlos E Catalano
Journal:  Biochemistry       Date:  2011-12-30       Impact factor: 3.162

2.  Structural basis for the interaction of a hexameric replicative helicase with the regulatory subunit of human DNA polymerase α-primase.

Authors:  Bo Zhou; Diana R Arnett; Xian Yu; Aaron Brewster; Gregory A Sowd; Charlies L Xie; Stefan Vila; Dahai Gai; Ellen Fanning; Xiaojiang S Chen
Journal:  J Biol Chem       Date:  2012-06-14       Impact factor: 5.157

3.  Fine tuning of a DNA fork by the RecQ helicase.

Authors:  Alicia K Byrd; Kevin D Raney
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-18       Impact factor: 11.205

4.  Exonuclease of human DNA polymerase gamma disengages its strand displacement function.

Authors:  Quan He; Christie K Shumate; Mark A White; Ian J Molineux; Y Whitney Yin
Journal:  Mitochondrion       Date:  2013-08-30       Impact factor: 4.160

5.  Yeast two-hybrid analysis of PriB-interacting proteins in replication restart primosome: a proposed PriB-SSB interaction model.

Authors:  Yen-Hua Huang; Min-Jon Lin; Cheng-Yang Huang
Journal:  Protein J       Date:  2013-08       Impact factor: 2.371

6.  Watching DNA breath one molecule at a time.

Authors:  Jingyi Fei; Taekjip Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-04       Impact factor: 11.205

7.  Human Primpol1: a novel guardian of stalled replication forks.

Authors:  Jun-Sub Im; Kyung Yong Lee; Laura W Dillon; Anindya Dutta
Journal:  EMBO Rep       Date:  2013-11-05       Impact factor: 8.807

8.  CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.

Authors:  Lance D Langston; Dan Zhang; Olga Yurieva; Roxana E Georgescu; Jeff Finkelstein; Nina Y Yao; Chiara Indiani; Mike E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

9.  Two mechanisms coordinate replication termination by the Escherichia coli Tus-Ter complex.

Authors:  Manjula Pandey; Mohamed M Elshenawy; Slobodan Jergic; Masateru Takahashi; Nicholas E Dixon; Samir M Hamdan; Smita S Patel
Journal:  Nucleic Acids Res       Date:  2015-05-24       Impact factor: 16.971

Review 10.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

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