Literature DB >> 21864687

Single-particle reconstruction using L(2)-gradient flow.

Ming Li1, Guoliang Xu, Carlos O S Sorzano, Fei Sun, Chandrajit L Bajaj.   

Abstract

In this paper, we present an iterative algorithm for reconstructing a three-dimensional density function from a set of two dimensional electron microscopy images. By minimizing an energy functional consisting of a fidelity term and a regularization term, an L(2)-gradient flow is derived. The flow is integrated by a finite element method in the spatial direction and an explicit Euler scheme in the temporal direction. Our method compares favorably with those of the weighted back projection, Fourier method, algebraic reconstruction technique and simultaneous iterative reconstruction technique. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21864687      PMCID: PMC3215675          DOI: 10.1016/j.jsb.2011.08.005

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  18 in total

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Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  FindEM--a fast, efficient program for automatic selection of particles from electron micrographs.

Authors:  A M Roseman
Journal:  J Struct Biol       Date:  2004 Jan-Feb       Impact factor: 2.867

4.  A multiresolution approach to orientation assignment in 3D electron microscopy of single particles.

Authors:  C O S Sorzano; S Jonić; C El-Bez; J M Carazo; S De Carlo; P Thévenaz; M Unser
Journal:  J Struct Biol       Date:  2004-06       Impact factor: 2.867

5.  Distinct symmetry and limited peptide refolding activity of the thermosomes from the acidothermophilic archaea Acidianus tengchongensis S5(T).

Authors:  Li Wang; Zhong-jun Hu; Yuan-ming Luo; Yan-wu Huo; Qing Ma; Yong-zhi He; Yu-ying Zhang; Fei Sun; Zhi-yang Dong
Journal:  Biochem Biophys Res Commun       Date:  2010-02-01       Impact factor: 3.575

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Authors:  D C Youla; H Webb
Journal:  IEEE Trans Med Imaging       Date:  1982       Impact factor: 10.048

7.  3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs).

Authors:  R Marabini; G T Herman; J M Carazo
Journal:  Ultramicroscopy       Date:  1998-04       Impact factor: 2.689

8.  Iterative methods for the three-dimensional reconstruction of an object from projections.

Authors:  P Gilbert
Journal:  J Theor Biol       Date:  1972-07       Impact factor: 2.691

9.  Algebraic reconstruction techniques (ART) for three-dimensional electron microscopy and x-ray photography.

Authors:  R Gordon; R Bender; G T Herman
Journal:  J Theor Biol       Date:  1970-12       Impact factor: 2.691

10.  Three-dimensional reconstruction from random projections: orientational alignment via Radon transforms.

Authors:  M Radermacher
Journal:  Ultramicroscopy       Date:  1994-02       Impact factor: 2.689

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  3 in total

Review 1.  Emerging Themes in CryoEM─Single Particle Analysis Image Processing.

Authors:  Jose Luis Vilas; Jose Maria Carazo; Carlos Oscar S Sorzano
Journal:  Chem Rev       Date:  2022-07-04       Impact factor: 72.087

2.  Shape-based regularization of electron tomographic reconstruction.

Authors:  Ajay Gopinath; Guoliang Xu; David Ress; Ozan Öktem; Sriram Subramaniam; Chandrajit Bajaj
Journal:  IEEE Trans Med Imaging       Date:  2012-08-20       Impact factor: 10.048

Review 3.  A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy.

Authors:  C O S Sorzano; J Vargas; J Otón; J M de la Rosa-Trevín; J L Vilas; M Kazemi; R Melero; L Del Caño; J Cuenca; P Conesa; J Gómez-Blanco; R Marabini; J M Carazo
Journal:  Biomed Res Int       Date:  2017-09-17       Impact factor: 3.411

  3 in total

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