Literature DB >> 15099579

A multiresolution approach to orientation assignment in 3D electron microscopy of single particles.

C O S Sorzano1, S Jonić, C El-Bez, J M Carazo, S De Carlo, P Thévenaz, M Unser.   

Abstract

Three-dimensional (3D) electron microscopy (3DEM) aims at the determination of the spatial distribution of the Coulomb potential of macromolecular complexes. The 3D reconstruction of a macromolecule using single-particle techniques involves thousands of 2D projections. One of the key parameters required to perform such a 3D reconstruction is the orientation of each projection image as well as its in-plane orientation. This information is unknown experimentally and must be determined using image-processing techniques. We propose the use of wavelets to match the experimental projections with those obtained from a reference 3D model. The wavelet decomposition of the projection images provides a framework for a multiscale matching algorithm in which speed and robustness to noise are gained. Furthermore, this multiresolution approach is combined with a novel orientation selection strategy. Results obtained from computer simulations as well as experimental data encourage the use of this approach.

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Substances:

Year:  2004        PMID: 15099579     DOI: 10.1016/j.jsb.2004.01.006

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  11 in total

1.  Modeling experimental image formation for likelihood-based classification of electron microscopy data.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Yacob Gómez-Llorente; Carmen San Martín; Paul P B Eggermont; José María Carazo
Journal:  Structure       Date:  2007-10       Impact factor: 5.006

Review 2.  3D electron microscopy of biological nanomachines: principles and applications.

Authors:  C O S Sorzano; S Jonic; M Cottevieille; E Larquet; N Boisset; S Marco
Journal:  Eur Biophys J       Date:  2007-07-05       Impact factor: 1.733

3.  Image processing for electron microscopy single-particle analysis using XMIPP.

Authors:  Sjors H W Scheres; Rafael Núñez-Ramírez; Carlos O S Sorzano; José María Carazo; Roberto Marabini
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

4.  Cryo-EM image alignment based on nonuniform fast Fourier transform.

Authors:  Zhengfan Yang; Pawel A Penczek
Journal:  Ultramicroscopy       Date:  2008-04-08       Impact factor: 2.689

5.  Single-particle reconstruction using L(2)-gradient flow.

Authors:  Ming Li; Guoliang Xu; Carlos O S Sorzano; Fei Sun; Chandrajit L Bajaj
Journal:  J Struct Biol       Date:  2011-08-16       Impact factor: 2.867

6.  Electric-Potential Reconstructions of Single Particles Using L-Gradient Flows.

Authors:  Ming Li; Guoliang Xu; Carlos O S Sorzano; Roberto Melero; Chandrajit Bajaj
Journal:  Proc Int Conf Biomed Eng Inform       Date:  2010-10-18

7.  A clustering approach to multireference alignment of single-particle projections in electron microscopy.

Authors:  C O S Sorzano; J R Bilbao-Castro; Y Shkolnisky; M Alcorlo; R Melero; G Caffarena-Fernández; M Li; G Xu; R Marabini; J M Carazo
Journal:  J Struct Biol       Date:  2010-03-31       Impact factor: 2.867

8.  Hybrid Electron Microscopy Normal Mode Analysis with Scipion.

Authors:  Mohamad Harastani; Carlos Oscar S Sorzano; Slavica Jonić
Journal:  Protein Sci       Date:  2019-11-20       Impact factor: 6.725

9.  Multiclass maximum-likelihood symmetry determination and motif reconstruction of 3-D helical objects from projection images for electron microscopy.

Authors:  Seunghee Lee; Peter C Doerschuk; John E Johnson
Journal:  IEEE Trans Image Process       Date:  2011-02-17       Impact factor: 10.856

Review 10.  Structural analysis of macromolecular assemblies by electron microscopy.

Authors:  E V Orlova; H R Saibil
Journal:  Chem Rev       Date:  2011-09-16       Impact factor: 60.622

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