Literature DB >> 8171751

Three-dimensional reconstruction from random projections: orientational alignment via Radon transforms.

M Radermacher1.   

Abstract

A method for alignment of projections with unknown projecting directions towards a three-dimensional reference has been developed. The technique has been applied to the three-dimensional reconstruction from images of a frozen-hydrated preparation of 50S ribosomal subunits from Escherichia coli recorded in the electron microscope. The algorithm as used here combines the Single Exposure Conical Reconstruction Technique (SECReT) with a three-dimensional orientation search. The algorithm allows for the refinement of a reconstruction obtained with SECReT by refinement of the true projection angles, and by the inclusion of projections with a priori unknown random orientation. With model data it is demonstrated that the algorithm works reliably even for signal-to-noise ratios lower than 1.

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Year:  1994        PMID: 8171751     DOI: 10.1016/0304-3991(94)90003-5

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  28 in total

1.  The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

Authors:  M Bárcena; T Ruiz; L E Donate; S E Brown; N E Dixon; M Radermacher; J M Carazo
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

2.  Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication.

Authors:  Maria G Gomez-Lorenzo; Mikel Valle; Joachim Frank; Claudia Gruss; Carlos Oscar S Sorzano; Xiaojiang S Chen; Luis Enrique Donate; Jose Maria Carazo
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

3.  The three-dimensional structure of complex I from Yarrowia lipolytica: a highly dynamic enzyme.

Authors:  M Radermacher; T Ruiz; T Clason; S Benjamin; U Brandt; V Zickermann
Journal:  J Struct Biol       Date:  2006-03-24       Impact factor: 2.867

Review 4.  3D electron microscopy of biological nanomachines: principles and applications.

Authors:  C O S Sorzano; S Jonic; M Cottevieille; E Larquet; N Boisset; S Marco
Journal:  Eur Biophys J       Date:  2007-07-05       Impact factor: 1.733

5.  Bowl-shaped oligomeric structures on membranes as DegP's new functional forms in protein quality control.

Authors:  Qing-Tao Shen; Xiao-Chen Bai; Lei-Fu Chang; Yi Wu; Hong-Wei Wang; Sen-Fang Sui
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-02       Impact factor: 11.205

6.  Single-particle reconstruction using L(2)-gradient flow.

Authors:  Ming Li; Guoliang Xu; Carlos O S Sorzano; Fei Sun; Chandrajit L Bajaj
Journal:  J Struct Biol       Date:  2011-08-16       Impact factor: 2.867

7.  3D Reconstruction of a Subcomplex of NADH-ubiquinone-oxidoreductase (Complex I) from Yarrowia lipolytica.

Authors:  M Radermacher; T Ruiz; D J Fowler; L Yu; S Dröse; S Krack; S Kerscher; V Zickermann; U Brandt
Journal:  Microsc Microanal       Date:  2011-07       Impact factor: 4.127

8.  Introducing robustness to maximum-likelihood refinement of electron-microscopy data.

Authors:  Sjors H W Scheres; José María Carazo
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

9.  Estimating view parameters from random projections for Tomography using spherical MDS.

Authors:  Yi Fang; Sundar Murugappan; Karthik Ramani
Journal:  BMC Med Imaging       Date:  2010-06-18       Impact factor: 1.930

10.  The structure of the ATP-bound state of S. cerevisiae phosphofructokinase determined by cryo-electron microscopy.

Authors:  Montserrat Bárcena; Michael Radermacher; Jörg Bär; Gerhard Kopperschläger; Teresa Ruiz
Journal:  J Struct Biol       Date:  2007-03-31       Impact factor: 2.867

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