Literature DB >> 21862972

Active DNA demethylation by oxidation and repair.

Zhizhong Gong1, Jian-Kang Zhu.   

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Year:  2011        PMID: 21862972      PMCID: PMC3357985          DOI: 10.1038/cr.2011.140

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


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  19 in total

1.  A new pyrimidine base from bacteriophage nucleic acids.

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2.  Gadd45a promotes epigenetic gene activation by repair-mediated DNA demethylation.

Authors:  Guillermo Barreto; Andrea Schäfer; Joachim Marhold; Dirk Stach; Suresh K Swaminathan; Vikas Handa; Gabi Döderlein; Nicole Maltry; Wei Wu; Frank Lyko; Christof Niehrs
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3.  Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

Authors:  Yu-Fei He; Bin-Zhong Li; Zheng Li; Peng Liu; Yang Wang; Qingyu Tang; Jianping Ding; Yingying Jia; Zhangcheng Chen; Lin Li; Yan Sun; Xiuxue Li; Qing Dai; Chun-Xiao Song; Kangling Zhang; Chuan He; Guo-Liang Xu
Journal:  Science       Date:  2011-08-04       Impact factor: 47.728

4.  Reprogramming towards pluripotency requires AID-dependent DNA demethylation.

Authors:  Nidhi Bhutani; Jennifer J Brady; Mara Damian; Alessandra Sacco; Stéphane Y Corbel; Helen M Blau
Journal:  Nature       Date:  2010-02-25       Impact factor: 49.962

5.  Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

Authors:  Christian Popp; Wendy Dean; Suhua Feng; Shawn J Cokus; Simon Andrews; Matteo Pellegrini; Steven E Jacobsen; Wolf Reik
Journal:  Nature       Date:  2010-02-25       Impact factor: 49.962

6.  The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid.

Authors:  N W Penn; R Suwalski; C O'Riley; K Bojanowski; R Yura
Journal:  Biochem J       Date:  1972-02       Impact factor: 3.857

7.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

8.  Conserved DNA methylation in Gadd45a(-/-) mice.

Authors:  Nora Engel; Jennifer S Tront; Toyin Erinle; Nghi Nguyen; Keith E Latham; Carmen Sapienza; Barbara Hoffman; Dan A Liebermann
Journal:  Epigenetics       Date:  2009-02-15       Impact factor: 4.528

Review 9.  Active DNA demethylation mediated by DNA glycosylases.

Authors:  Jian-Kang Zhu
Journal:  Annu Rev Genet       Date:  2009       Impact factor: 16.830

10.  The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Authors:  Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

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  32 in total

1.  Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes.

Authors:  Xi-liang Wang; Shu-hui Song; Yong-Sheng Wu; Yu-Li Li; Ting-ting Chen; Zhi-yuan Huang; Shuo Liu; Thomas L Dunwell; Gerd P Pfeifer; Jim M Dunwell; Raheema Wamaedeesa; Ihsan Ullah; Yinsheng Wang; Song-nian Hu
Journal:  J Exp Bot       Date:  2015-08-13       Impact factor: 6.992

2.  Epigenetic stability, adaptability, and reversibility in human embryonic stem cells.

Authors:  Joshua D Tompkins; Christine Hall; Vincent Chang-yi Chen; Arthur Xuejun Li; Xiwei Wu; David Hsu; Larry A Couture; Arthur D Riggs
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-16       Impact factor: 11.205

3.  Antisilencing role of the RNA-directed DNA methylation pathway and a histone acetyltransferase in Arabidopsis.

Authors:  Xiaojie Li; Weiqiang Qian; Yusheng Zhao; Chunlei Wang; Jie Shen; Jian-Kang Zhu; Zhizhong Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

4.  APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3'-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability.

Authors:  Jinchao Li; Wenjie Liang; Yan Li; Weiqiang Qian
Journal:  Plant Cell       Date:  2018-08-22       Impact factor: 11.277

Review 5.  Redox regulation of the epigenetic landscape in cancer: a role for metabolic reprogramming in remodeling the epigenome.

Authors:  Michael J Hitchler; Frederick E Domann
Journal:  Free Radic Biol Med       Date:  2012-09-26       Impact factor: 7.376

Review 6.  Multifaceted roles for thymine DNA glycosylase in embryonic development and human carcinogenesis.

Authors:  Xuehe Xu; David S Watt; Chunming Liu
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2015-09-14       Impact factor: 3.848

7.  Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.

Authors:  Chunlei Wang; Xiaomei Dong; Dan Jin; Yusheng Zhao; Shaojun Xie; Xiaojie Li; Xinjian He; Zhaobo Lang; Jinsheng Lai; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant Physiol       Date:  2015-01-15       Impact factor: 8.340

8.  Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells.

Authors:  Yongyan Wu; Zekun Guo; Ye Liu; Bo Tang; Yi Wang; Liping Yang; Juan Du; Yong Zhang
Journal:  Mol Biol Rep       Date:  2012-12-20       Impact factor: 2.316

9.  The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Authors:  María Isabel Martínez-Macías; Dolores Córdoba-Cañero; Rafael R Ariza; Teresa Roldán-Arjona
Journal:  J Biol Chem       Date:  2013-01-11       Impact factor: 5.157

10.  Thymine DNA glycosylase is a positive regulator of Wnt signaling in colorectal cancer.

Authors:  Xuehe Xu; Tianxin Yu; Jiandang Shi; Xi Chen; Wen Zhang; Ting Lin; Zhihong Liu; Yadong Wang; Zheng Zeng; Chi Wang; Mingsong Li; Chunming Liu
Journal:  J Biol Chem       Date:  2014-02-14       Impact factor: 5.157

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