Literature DB >> 21846786

Natural language processing: an introduction.

Prakash M Nadkarni1, Lucila Ohno-Machado, Wendy W Chapman.   

Abstract

OBJECTIVES: To provide an overview and tutorial of natural language processing (NLP) and modern NLP-system design. TARGET AUDIENCE: This tutorial targets the medical informatics generalist who has limited acquaintance with the principles behind NLP and/or limited knowledge of the current state of the art. SCOPE: We describe the historical evolution of NLP, and summarize common NLP sub-problems in this extensive field. We then provide a synopsis of selected highlights of medical NLP efforts. After providing a brief description of common machine-learning approaches that are being used for diverse NLP sub-problems, we discuss how modern NLP architectures are designed, with a summary of the Apache Foundation's Unstructured Information Management Architecture. We finally consider possible future directions for NLP, and reflect on the possible impact of IBM Watson on the medical field.

Mesh:

Year:  2011        PMID: 21846786      PMCID: PMC3168328          DOI: 10.1136/amiajnl-2011-000464

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  39 in total

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2.  A novel hybrid approach to automated negation detection in clinical radiology reports.

Authors:  Yang Huang; Henry J Lowe
Journal:  J Am Med Inform Assoc       Date:  2007-02-28       Impact factor: 4.497

3.  Evaluating lexical variant generation to improve information retrieval.

Authors:  G Divita; A C Browne; T C Rindflesch
Journal:  Proc AMIA Symp       Date:  1998

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Authors:  A V Lukashin; M Borodovsky
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5.  Pfam: multiple sequence alignments and HMM-profiles of protein domains.

Authors:  E L Sonnhammer; S R Eddy; E Birney; A Bateman; R Durbin
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 6.  Natural language processing in medicine: an overview.

Authors:  P Spyns
Journal:  Methods Inf Med       Date:  1996-12       Impact factor: 2.176

Review 7.  Medical diagnostic decision support systems--past, present, and future: a threaded bibliography and brief commentary.

Authors:  R A Miller
Journal:  J Am Med Inform Assoc       Date:  1994 Jan-Feb       Impact factor: 4.497

8.  Ambiguity resolution while mapping free text to the UMLS Metathesaurus.

Authors:  T C Rindflesch; A R Aronson
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1994

9.  Medical language processing: applications to patient data representation and automatic encoding.

Authors:  N Sager; M Lyman; N T Nhàn; L J Tick
Journal:  Methods Inf Med       Date:  1995-03       Impact factor: 2.176

10.  A concept-based retrieval system for thoracic radiology.

Authors:  R K Taira; D B Johnson; V Bhushan; M Rivera; C Wong; L Huang; D R Aberle; M Greaves; J G Goldin
Journal:  J Digit Imaging       Date:  1996-02       Impact factor: 4.056

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  194 in total

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6.  Text mining for adverse drug events: the promise, challenges, and state of the art.

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7.  Adenoma Detection Rate Falls at the End of the Day in a Large Multi-site Sample.

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Journal:  Dig Dis Sci       Date:  2018-02-03       Impact factor: 3.199

8.  Validity of Natural Language Processing for Ascertainment of EGFR and ALK Test Results in SEER Cases of Stage IV Non-Small-Cell Lung Cancer.

Authors:  Bernardo Haddock Lobo Goulart; Emily T Silgard; Christina S Baik; Aasthaa Bansal; Qin Sun; Eric B Durbin; Isaac Hands; Darshil Shah; Susanne M Arnold; Scott D Ramsey; Ramakanth Kavuluru; Stephen M Schwartz
Journal:  JCO Clin Cancer Inform       Date:  2019-05

9.  Natural language processing as an alternative to manual reporting of colonoscopy quality metrics.

Authors:  Gottumukkala S Raju; Phillip J Lum; Rebecca S Slack; Selvi Thirumurthi; Patrick M Lynch; Ethan Miller; Brian R Weston; Marta L Davila; Manoop S Bhutani; Mehnaz A Shafi; Robert S Bresalier; Alexander A Dekovich; Jeffrey H Lee; Sushovan Guha; Mala Pande; Boris Blechacz; Asif Rashid; Mark Routbort; Gladis Shuttlesworth; Lopa Mishra; John R Stroehlein; William A Ross
Journal:  Gastrointest Endosc       Date:  2015-04-22       Impact factor: 9.427

10.  Using natural language processing on the free text of clinical documents to screen for evidence of homelessness among US veterans.

Authors:  Adi V Gundlapalli; Marjorie E Carter; Miland Palmer; Thomas Ginter; Andrew Redd; Steven Pickard; Shuying Shen; Brett South; Guy Divita; Scott Duvall; Thien M Nguyen; Leonard W D'Avolio; Matthew Samore
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16
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