Literature DB >> 11032036

Efficient event-driven simulation of large networks of spiking neurons and dynamical synapses.

M Mattia1, P Del Giudice.   

Abstract

A simulation procedure is described for making feasible large-scale simulations of recurrent neural networks of spiking neurons and plastic synapses. The procedure is applicable if the dynamic variables of both neurons and synapses evolve deterministically between any two successive spikes. Spikes introduce jumps in these variables, and since spike trains are typically noisy, spikes introduce stochasticity into both dynamics. Since all events in the simulation are guided by the arrival of spikes, at neurons or synapses, we name this procedure event-driven. The procedure is described in detail, and its logic and performance are compared with conventional (synchronous) simulations. The main impact of the new approach is a drastic reduction of the computational load incurred upon introduction of dynamic synaptic efficacies, which vary organically as a function of the activities of the pre- and postsynaptic neurons. In fact, the computational load per neuron in the presence of the synaptic dynamics grows linearly with the number of neurons and is only about 6% more than the load with fixed synapses. Even the latter is handled quite efficiently by the algorithm. We illustrate the operation of the algorithm in a specific case with integrate-and-fire neurons and specific spike-driven synaptic dynamics. Both dynamical elements have been found to be naturally implementable in VLSI. This network is simulated to show the effects on the synaptic structure of the presentation of stimuli, as well as the stability of the generated matrix to the neural activity it induces.

Mesh:

Year:  2000        PMID: 11032036     DOI: 10.1162/089976600300014953

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  27 in total

1.  Spiking neural network simulation: memory-optimal synaptic event scheduling.

Authors:  Robert D Stewart; Kevin N Gurney
Journal:  J Comput Neurosci       Date:  2010-11-03       Impact factor: 1.621

2.  Extracting information from the power spectrum of synaptic noise.

Authors:  Alain Destexhe; Michael Rudolph
Journal:  J Comput Neurosci       Date:  2004 Nov-Dec       Impact factor: 1.621

3.  Independent variable time-step integration of individual neurons for network simulations.

Authors:  William W Lytton; Michael L Hines
Journal:  Neural Comput       Date:  2005-04       Impact factor: 2.026

4.  Parallel network simulations with NEURON.

Authors:  M Migliore; C Cannia; W W Lytton; Henry Markram; M L Hines
Journal:  J Comput Neurosci       Date:  2006-05-26       Impact factor: 1.621

Review 5.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

6.  Voltage-stepping schemes for the simulation of spiking neural networks.

Authors:  G Zheng; A Tonnelier; D Martinez
Journal:  J Comput Neurosci       Date:  2008-11-26       Impact factor: 1.621

7.  Library-based numerical reduction of the Hodgkin-Huxley neuron for network simulation.

Authors:  Yi Sun; Douglas Zhou; Aaditya V Rangan; David Cai
Journal:  J Comput Neurosci       Date:  2009-04-29       Impact factor: 1.621

8.  A generalized linear integrate-and-fire neural model produces diverse spiking behaviors.

Authors:  Stefan Mihalaş; Ernst Niebur
Journal:  Neural Comput       Date:  2009-03       Impact factor: 2.026

9.  Exploring the spectrum of dynamical regimes and timescales in spontaneous cortical activity.

Authors:  Maurizio Mattia; Maria V Sanchez-Vives
Journal:  Cogn Neurodyn       Date:  2011-11-01       Impact factor: 5.082

10.  Accuracy evaluation of numerical methods used in state-of-the-art simulators for spiking neural networks.

Authors:  Stephan Henker; Johannes Partzsch; René Schüffny
Journal:  J Comput Neurosci       Date:  2011-08-12       Impact factor: 1.621

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