Literature DB >> 19011928

The quantitative single-neuron modeling competition.

Renaud Jolivet1, Felix Schürmann, Thomas K Berger, Richard Naud, Wulfram Gerstner, Arnd Roth.   

Abstract

As large-scale, detailed network modeling projects are flourishing in the field of computational neuroscience, it is more and more important to design single neuron models that not only capture qualitative features of real neurons but are quantitatively accurate in silico representations of those. Recent years have seen substantial effort being put in the development of algorithms for the systematic evaluation and optimization of neuron models with respect to electrophysiological data. It is however difficult to compare these methods because of the lack of appropriate benchmark tests. Here, we describe one such effort of providing the community with a standardized set of tests to quantify the performances of single neuron models. Our effort takes the form of a yearly challenge similar to the ones which have been present in the machine learning community for some time. This paper gives an account of the first two challenges which took place in 2007 and 2008 and discusses future directions. The results of the competition suggest that best performance on data obtained from single or double electrode current or conductance injection is achieved by models that combine features of standard leaky integrate-and-fire models with a second variable reflecting adaptation, refractoriness, or a dynamic threshold.

Mesh:

Year:  2008        PMID: 19011928     DOI: 10.1007/s00422-008-0261-x

Source DB:  PubMed          Journal:  Biol Cybern        ISSN: 0340-1200            Impact factor:   2.086


  43 in total

1.  Divide et impera: optimizing compartmental models of neurons step by step.

Authors:  Arnd Roth; Armin Bahl
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2.  Temporal whitening by power-law adaptation in neocortical neurons.

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Journal:  Nat Neurosci       Date:  2013-06-09       Impact factor: 24.884

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4.  A multi-timescale adaptive threshold model for the SAI tactile afferent to predict response to mechanical vibration.

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5.  Accuracy evaluation of numerical methods used in state-of-the-art simulators for spiking neural networks.

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Journal:  J Comput Neurosci       Date:  2011-08-12       Impact factor: 1.621

6.  Intermediate intrinsic diversity enhances neural population coding.

Authors:  Shreejoy J Tripathy; Krishnan Padmanabhan; Richard C Gerkin; Nathaniel N Urban
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-29       Impact factor: 11.205

7.  Training and Spontaneous Reinforcement of Neuronal Assemblies by Spike Timing Plasticity.

Authors:  Gabriel Koch Ocker; Brent Doiron
Journal:  Cereb Cortex       Date:  2019-03-01       Impact factor: 5.357

8.  Made-to-order spiking neuron model equipped with a multi-timescale adaptive threshold.

Authors:  Ryota Kobayashi; Yasuhiro Tsubo; Shigeru Shinomoto
Journal:  Front Comput Neurosci       Date:  2009-07-30       Impact factor: 2.380

9.  Calcium waves in astrocyte networks: theory and experiments.

Authors:  Michele Giugliano
Journal:  Front Neurosci       Date:  2009-09-15       Impact factor: 4.677

10.  A threshold equation for action potential initiation.

Authors:  Jonathan Platkiewicz; Romain Brette
Journal:  PLoS Comput Biol       Date:  2010-07-08       Impact factor: 4.475

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