Literature DB >> 22058767

Bis(guanidinium) chloranilate.

Konstantin A Udachin, Md Badruz Zaman, John A Ripmeester.   

Abstract

The asymmetric unit of the title co-crystal, 2CH(6)N(3) (+)·C(6)Cl(2)O(4) (2-), contains one half of a chloranilate anion and one guanidinium cation, which are connected by strong N-H⋯O hydrogen bonds into a two-dimensional network.

Entities:  

Year:  2011        PMID: 22058767      PMCID: PMC3201558          DOI: 10.1107/S1600536811036373

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For organic co-crystals containing 2,5-dihy­droxy-3,6-dichloro-1,4-benzoquinone (chloranilic acid), see: Andersen & Andersen (1975 ▶); Horiuchi et al. (2005 ▶, 2007 ▶); Zaman et al. (1999a ▶,b ▶, 2010 ▶). For inorganic co-ordination polymers containing chloranilic acid, see: Kitagawa et al. (2002 ▶). For guanidine and guanidinium structures, see: Abrahams et al. (2004 ▶, 2005 ▶); Best et al. (2003 ▶); Said et al. (2006 ▶); Smith & Wermuth (2010 ▶, 2011 ▶).

Experimental

Crystal data

2CH6N3C6Cl2O4 2− M = 327.14 Monoclinic, a = 19.5224 (14) Å b = 3.7316 (3) Å c = 18.4103 (14) Å β = 116.087 (1)° V = 1204.56 (16) Å3 Z = 4 Mo Kα radiation μ = 0.57 mm−1 T = 173 K 0.45 × 0.40 × 0.30 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS, Sheldrick, 1996 ▶) T min = 0.785, T max = 0.849 6965 measured reflections 1674 independent reflections 1525 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.078 S = 1.08 1674 reflections 116 parameters All H-atom parameters refined Δρmax = 0.47 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2003 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ATOMS (Dowty, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811036373/vm2118sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036373/vm2118Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036373/vm2118Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2CH6N3+·C6Cl2O42F(000) = 672
Mr = 327.14Dx = 1.804 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -C 2ycCell parameters from 220 reflections
a = 19.5224 (14) Åθ = 4.0–29.0°
b = 3.7316 (3) ŵ = 0.57 mm1
c = 18.4103 (14) ÅT = 173 K
β = 116.087 (1)°Block, yellow
V = 1204.56 (16) Å30.45 × 0.40 × 0.30 mm
Z = 4
Bruker SMART 1000 CCD diffractometer1674 independent reflections
Radiation source: fine-focus sealed tube1525 reflections with I > 2σ(I)
graphiteRint = 0.020
ω scansθmax = 29.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS, Sheldrick, 1996)h = −27→27
Tmin = 0.785, Tmax = 0.849k = −5→5
6965 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.078All H-atom parameters refined
S = 1.08w = 1/[σ2(Fo2) + (0.0494P)2 + 0.7637P] where P = (Fo2 + 2Fc2)/3
1674 reflections(Δ/σ)max < 0.001
116 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.036370 (14)0.71393 (8)0.174949 (15)0.01677 (10)
O20.14122 (4)1.0852 (3)0.12281 (5)0.01823 (18)
O30.11119 (5)1.3347 (3)−0.02492 (5)0.01949 (19)
N10.23429 (6)1.5093 (3)−0.07912 (6)0.0213 (2)
H20.2183 (11)1.461 (6)−0.0438 (12)0.037 (5)*
H10.2810 (10)1.436 (5)−0.0711 (10)0.028 (4)*
N20.11581 (6)1.7324 (3)−0.16016 (7)0.0201 (2)
H40.0871 (10)1.852 (5)−0.1996 (11)0.024 (4)*
H30.1026 (10)1.648 (5)−0.1273 (11)0.030 (5)*
N30.21154 (6)1.7664 (3)−0.20145 (7)0.0211 (2)
H60.2549 (12)1.736 (5)−0.1912 (12)0.034 (5)*
H50.1782 (11)1.824 (6)−0.2505 (13)0.039 (5)*
C10.01581 (6)0.8726 (3)0.07862 (6)0.0143 (2)
C20.07504 (6)1.0395 (3)0.06811 (6)0.0140 (2)
C30.05815 (6)1.1811 (3)−0.01681 (6)0.0139 (2)
C40.18720 (6)1.6695 (3)−0.14746 (7)0.0154 (2)
U11U22U33U12U13U23
Cl10.01745 (15)0.02061 (16)0.01101 (15)−0.00081 (9)0.00514 (11)0.00188 (9)
O20.0120 (3)0.0267 (4)0.0132 (4)−0.0009 (3)0.0030 (3)0.0000 (3)
O30.0147 (4)0.0274 (5)0.0165 (4)−0.0040 (3)0.0069 (3)0.0016 (3)
N10.0181 (5)0.0293 (5)0.0165 (5)0.0044 (4)0.0077 (4)0.0056 (4)
N20.0150 (4)0.0270 (5)0.0191 (5)0.0023 (4)0.0082 (4)0.0045 (4)
N30.0154 (5)0.0326 (6)0.0154 (5)0.0012 (4)0.0069 (4)0.0049 (4)
C10.0139 (4)0.0182 (5)0.0099 (4)−0.0003 (4)0.0043 (4)0.0014 (4)
C20.0133 (4)0.0161 (5)0.0119 (4)0.0007 (4)0.0051 (4)−0.0008 (4)
C30.0129 (5)0.0166 (5)0.0120 (5)0.0004 (4)0.0053 (4)0.0000 (4)
C40.0142 (5)0.0168 (5)0.0142 (5)−0.0013 (4)0.0052 (4)−0.0015 (4)
Cl1—C11.7409 (11)N2—H30.818 (19)
O2—C21.2522 (13)N3—C41.3267 (15)
O3—C31.2487 (13)N3—H60.79 (2)
N1—C41.3297 (15)N3—H50.88 (2)
N1—H20.85 (2)C1—C21.3997 (14)
N1—H10.901 (17)C1—C3i1.4051 (14)
N2—C41.3287 (14)C2—C31.5423 (15)
N2—H40.827 (18)C3—C1i1.4052 (14)
C4—N1—H2118.9 (13)C3i—C1—Cl1118.10 (8)
C4—N1—H1121.3 (11)O2—C2—C1124.91 (10)
H2—N1—H1119.6 (17)O2—C2—C3116.98 (9)
C4—N2—H4120.2 (12)C1—C2—C3118.10 (9)
C4—N2—H3116.7 (13)O3—C3—C1i125.41 (10)
H4—N2—H3123.1 (17)O3—C3—C2117.36 (9)
C4—N3—H6118.7 (14)C1i—C3—C2117.23 (9)
C4—N3—H5119.3 (13)N3—C4—N2120.90 (11)
H6—N3—H5121.0 (18)N3—C4—N1120.33 (11)
C2—C1—C3i124.66 (10)N2—C4—N1118.76 (11)
C2—C1—Cl1117.24 (8)
D—H···AD—HH···AD···AD—H···A
N1—H2···O30.85 (2)2.32 (2)3.0504 (13)144.4 (16)
N1—H1···O2ii0.901 (17)2.117 (17)2.8978 (13)144.4 (15)
N1—H1···O3ii0.901 (17)2.303 (18)3.0555 (13)140.9 (15)
N2—H3···O30.818 (19)2.161 (19)2.9337 (14)157.7 (17)
N3—H6···O2ii0.79 (2)2.21 (2)2.9016 (14)146.3 (18)
N3—H5···O2iii0.88 (2)2.14 (2)2.9586 (13)154.4 (17)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H2⋯O30.85 (2)2.32 (2)3.0504 (13)144.4 (16)
N1—H1⋯O2i0.901 (17)2.117 (17)2.8978 (13)144.4 (15)
N1—H1⋯O3i0.901 (17)2.303 (18)3.0555 (13)140.9 (15)
N2—H3⋯O30.818 (19)2.161 (19)2.9337 (14)157.7 (17)
N3—H6⋯O2i0.79 (2)2.21 (2)2.9016 (14)146.3 (18)
N3—H5⋯O2ii0.88 (2)2.14 (2)2.9586 (13)154.4 (17)

Symmetry codes: (i) ; (ii) .

  7 in total

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3.  A short history of SHELX.

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4.  Guanidinium ion as a symmetrical template in the formation of cubic hydrogen-bonded borate networks with the boracite topology.

Authors:  Brendan F Abrahams; Marissa G Haywood; Richard Robson
Journal:  J Am Chem Soc       Date:  2005-01-26       Impact factor: 15.419

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Authors:  Graham Smith; Urs D Wermuth
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Authors:  Sachio Horiuchi; Reiji Kumai; Yoshinori Tokura
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7.  Bis(guanidinium) 4,5-dichloro-phthalate monohydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11
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1.  Triprolidinium dichloranilate-chloranilic acid-methanol-water (2/1/2/2).

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  1 in total

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