Literature DB >> 21820083

Identifying potential adverse effects using the web: a new approach to medical hypothesis generation.

Adrian Benton1, Lyle Ungar, Shawndra Hill, Sean Hennessy, Jun Mao, Annie Chung, Charles E Leonard, John H Holmes.   

Abstract

Medical message boards are online resources where users with a particular condition exchange information, some of which they might not otherwise share with medical providers. Many of these boards contain a large number of posts and contain patient opinions and experiences that would be potentially useful to clinicians and researchers. We present an approach that is able to collect a corpus of medical message board posts, de-identify the corpus, and extract information on potential adverse drug effects discussed by users. Using a corpus of posts to breast cancer message boards, we identified drug event pairs using co-occurrence statistics. We then compared the identified drug event pairs with adverse effects listed on the package labels of tamoxifen, anastrozole, exemestane, and letrozole. Of the pairs identified by our system, 75-80% were documented on the drug labels. Some of the undocumented pairs may represent previously unidentified adverse drug effects.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2011        PMID: 21820083      PMCID: PMC4404640          DOI: 10.1016/j.jbi.2011.07.005

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  17 in total

1.  Comparative performance of two quantitative safety signalling methods: implications for use in a pharmacovigilance department.

Authors:  June S Almenoff; Karol K LaCroix; Nancy A Yuen; David Fram; William DuMouchel
Journal:  Drug Saf       Date:  2006       Impact factor: 5.606

2.  "You don't need a prescription to go gluten-free": the scientific self-diagnosis of celiac disease.

Authors:  Denise A Copelton; Giuseppina Valle
Journal:  Soc Sci Med       Date:  2009-06-24       Impact factor: 4.634

3.  Breast and prostate cancer online discussion boards: a thematic analysis of gender differences and similarities.

Authors:  Rebecca J Gooden; Helen R Winefield
Journal:  J Health Psychol       Date:  2007-01

4.  Web chatter before and after the Women's Health Initiative results: a content analysis of on-line menopause message boards.

Authors:  Tara M Cousineau; Diana Rancourt; Traci Craig Green
Journal:  J Health Commun       Date:  2006-03

5.  Infodemiology and infoveillance: framework for an emerging set of public health informatics methods to analyze search, communication and publication behavior on the Internet.

Authors:  Gunther Eysenbach
Journal:  J Med Internet Res       Date:  2009-03-27       Impact factor: 5.428

6.  Social interactions in an online self-management program for rheumatoid arthritis.

Authors:  Cheryl L Shigaki; Karen L Smarr; Yang Gong; Kathleen Donovan-Hanson; Chokkalingam Siva; Rebecca A Johnson; Bin Ge; Dale R Musser
Journal:  Chronic Illn       Date:  2008-12

7.  Weight gain after primary surgery for breast cancer--effect of tamoxifen.

Authors:  P J Hoskin; S Ashley; J R Yarnold
Journal:  Breast Cancer Res Treat       Date:  1992       Impact factor: 4.872

8.  Health literacy and online health discussions of North American Black women.

Authors:  L Donelle; L Hoffman-Goetz
Journal:  Women Health       Date:  2008

9.  [An internet based discussion board for persons with borderline personality disorders moderated health care professionals].

Authors:  Elmar Habermeyer; Viola Habermeyer; Karl Jähn; Gregor Domes; Eckhard Nagel; Sabine C Herpertz
Journal:  Psychiatr Prax       Date:  2008-09-05

10.  Use of discussion boards in a theory-based health web site for older adults.

Authors:  Eun-Shim Nahm; Barbara Resnick; Mary DeGrezia; Rebecca Brotemarkle
Journal:  Nurs Res       Date:  2009 Nov-Dec       Impact factor: 2.381

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  40 in total

1.  medpie: an information extraction package for medical message board posts.

Authors:  A Benton; J H Holmes; S Hill; A Chung; L Ungar
Journal:  Bioinformatics       Date:  2012-01-19       Impact factor: 6.937

2.  Mining Social Media Data for Biomedical Signals and Health-Related Behavior.

Authors:  Rion Brattig Correia; Ian B Wood; Johan Bollen; Luis M Rocha
Journal:  Annu Rev Biomed Data Sci       Date:  2020-05-04

3.  Text mining for adverse drug events: the promise, challenges, and state of the art.

Authors:  Rave Harpaz; Alison Callahan; Suzanne Tamang; Yen Low; David Odgers; Sam Finlayson; Kenneth Jung; Paea LePendu; Nigam H Shah
Journal:  Drug Saf       Date:  2014-10       Impact factor: 5.606

Review 4.  Utilizing social media data for pharmacovigilance: A review.

Authors:  Abeed Sarker; Rachel Ginn; Azadeh Nikfarjam; Karen O'Connor; Karen Smith; Swetha Jayaraman; Tejaswi Upadhaya; Graciela Gonzalez
Journal:  J Biomed Inform       Date:  2015-02-23       Impact factor: 6.317

5.  Disambiguation of PharmGKB drug-disease relations with NDF-RT and SPL.

Authors:  Qian Zhu; Robert R Freimuth; Jyotishman Pathak; Matthew J Durski; Christopher G Chute
Journal:  J Biomed Inform       Date:  2013-05-29       Impact factor: 6.317

6.  Undesirable effects related to oral antineoplastic drugs: comparison between patients' internet narratives and a national pharmacovigilance database.

Authors:  Arnaud Pages; Emmanuelle Bondon-Guitton; Jean Louis Montastruc; Haleh Bagheri
Journal:  Drug Saf       Date:  2014-08       Impact factor: 5.606

7.  "Sub is a weird drug:" A web-based study of lay attitudes about use of buprenorphine to self-treat opioid withdrawal symptoms.

Authors:  Raminta Daniulaityte; Robert Carlson; Gregory Brigham; Delroy Cameron; Amit Sheth
Journal:  Am J Addict       Date:  2015-05-25

8.  Portable automatic text classification for adverse drug reaction detection via multi-corpus training.

Authors:  Abeed Sarker; Graciela Gonzalez
Journal:  J Biomed Inform       Date:  2014-11-08       Impact factor: 6.317

9.  The potential of translational bioinformatics approaches for pharmacology research.

Authors:  Lang Li
Journal:  Br J Clin Pharmacol       Date:  2015-06-01       Impact factor: 4.335

10.  Online discussion of drug side effects and discontinuation among breast cancer survivors.

Authors:  Jun J Mao; Annie Chung; Adrian Benton; Shawndra Hill; Lyle Ungar; Charles E Leonard; Sean Hennessy; John H Holmes
Journal:  Pharmacoepidemiol Drug Saf       Date:  2013-01-16       Impact factor: 2.890

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