Literature DB >> 21816204

Functional evidence of post-transcriptional regulation by pseudogenes.

Enrique M Muro1, Nancy Mah, Miguel A Andrade-Navarro.   

Abstract

Pseudogenes have been mainly considered as functionless evolutionary relics since their discovery in 1977. However, multiple mechanisms of pseudogene functionality have been proposed both at the transcriptional and post-transcriptional level. This review focuses on the role of pseudogenes as post-transcriptional regulators. Two lines of research have recently presented strong evidence of their potential function as post-transcriptional regulators of the corresponding parental genes from which they originate. First, pseudogene genomic sequences can encode siRNAs. Second, pseudogene transcripts can act as indirect post-transcriptional regulators decoying ncRNA, in particular miRNAs that target the parental gene. This has been demonstrated for PTEN and KRAS, two genes involved in tumorigenesis. The role of pseudogenes in disease has not been proven and seems to be the next research landmark. In this review, we chronicle the events following the initial discovery of the 'useless' pseudogene to its breakthrough as a functional molecule with hitherto unbeknownst potential to influence human disease.
Copyright © 2011 Elsevier Masson SAS. All rights reserved.

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Year:  2011        PMID: 21816204     DOI: 10.1016/j.biochi.2011.07.024

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  38 in total

1.  Artificially designed promoters: understanding the role of spatial features and canonical binding sites in transcription.

Authors:  Martina Baumann; Marc P Höppner; Michael Meier; Jens Pontiller; Wolfgang Ernst; Reingard Grabherr; Evan Mauceli; Manfred G Grabherr
Journal:  Bioeng Bugs       Date:  2012-03-01

2.  VEGFR-1 Pseudogene Expression and Regulatory Function in Human Colorectal Cancer Cells.

Authors:  Xiangcang Ye; Fan Fan; Rajat Bhattacharya; Seth Bellister; Delphine R Boulbes; Rui Wang; Ling Xia; Cristina Ivan; Xiaofeng Zheng; George A Calin; Jing Wang; Xiongbin Lu; Lee M Ellis
Journal:  Mol Cancer Res       Date:  2015-06-03       Impact factor: 5.852

Review 3.  Interplay Between Exosomes, microRNAs and Toll-Like Receptors in Brain Disorders.

Authors:  Vera Paschon; Silvia Honda Takada; Juliane Midori Ikebara; Erica Sousa; Reza Raeisossadati; Henning Ulrich; Alexandre Hiroaki Kihara
Journal:  Mol Neurobiol       Date:  2015-04-11       Impact factor: 5.590

4.  Silencing the OCT4-PG1 pseudogene reduces OCT-4 protein levels and changes characteristics of the multidrug resistance phenotype in chronic myeloid leukemia.

Authors:  Aline Portantiolo Lettnin; Eduardo Felipe Wagner; Michele Carrett-Dias; Karina Dos Santos Machado; Adriano Werhli; Andrés Delgado Cañedo; Gilma Santos Trindade; Ana Paula de Souza Votto
Journal:  Mol Biol Rep       Date:  2019-02-05       Impact factor: 2.316

Review 5.  The frontier of RNA metamorphosis and ribosome signature in neocortical development.

Authors:  Matthew L Kraushar; Tatiana Popovitchenko; Nicole L Volk; Mladen-Roko Rasin
Journal:  Int J Dev Neurosci       Date:  2016-05-27       Impact factor: 2.457

6.  Comparative analysis of pseudogenes across three phyla.

Authors:  Cristina Sisu; Baikang Pei; Jing Leng; Adam Frankish; Yan Zhang; Suganthi Balasubramanian; Rachel Harte; Daifeng Wang; Michael Rutenberg-Schoenberg; Wyatt Clark; Mark Diekhans; Joel Rozowsky; Tim Hubbard; Jennifer Harrow; Mark B Gerstein
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-25       Impact factor: 11.205

7.  A Methodology to Study Pseudogenized lincRNAs.

Authors:  Sweta Talyan; Miguel A Andrade-Navarro; Enrique M Muro
Journal:  Methods Mol Biol       Date:  2021

8.  Multiple information carried by RNAs: total eclipse or a light at the end of the tunnel?

Authors:  Baptiste Bogard; Claire Francastel; Florent Hubé
Journal:  RNA Biol       Date:  2020-06-26       Impact factor: 4.652

9.  Pseudogene Annexin A2 Pseudogene 1 Contributes to Hepatocellular Carcinoma Progression by Modulating Its Parental Gene ANXA2 via miRNA-376a-3p.

Authors:  Huohui Ou; Qingbo Liu; Jie Lin; Wei He; Weijie Zhang; Jing Ma; Weidong Wang
Journal:  Dig Dis Sci       Date:  2021-01-04       Impact factor: 3.199

Review 10.  Regulatory mechanisms of long noncoding RNAs in vertebrate central nervous system development and function.

Authors:  J L Knauss; T Sun
Journal:  Neuroscience       Date:  2013-01-18       Impact factor: 3.590

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