Literature DB >> 21814589

Real-Time Infrared Overtone Laser Control of Temperature in Picoliter H(2)O Samples: "Nanobathtubs" for Single Molecule Microscopy.

Erik D Holmstrom1, David J Nesbitt.   

Abstract

An approach for high spatiotemporal control of aqueous sample temperatures in confocal microscopy is reported. This technique exploits near-IR diode-laser illumination to locally heat picoliter volumes of water via first-overtone excitation in the OH-stretch manifold. A thin water cell after the objective resonantly removes any residual IR light from the detection system, allowing for continuous observation of single-molecule fluorescence throughout the heating event. This technique is tested quantitatively by reproducing single-molecule RNA folding results obtained from "bulk" stage heating measurements. Calibration of sample temperatures is obtained from time-correlated single-photon counting studies of Rhodamine B fluorescence decay. We obtain an upper limit to the heating response time (τ(heat) < 20 ms) consistent with even faster estimates (τ(heat) ≈ 0.25 ms) based on laser spot size, H(2)O heat capacit,y and absorption cross section. This combination of fast, noncontact heating of picoliter volumes provides new opportunities for real-time thermodynamic/kinetic studies at the single-molecule level.

Entities:  

Year:  2010        PMID: 21814589      PMCID: PMC3148086          DOI: 10.1021/jz100663e

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  18 in total

1.  Photothermal temperature control of a chemical reaction on a microchip using an infrared diode laser.

Authors:  M N Slyadnev; Y Tanaka; M Tokeshi; T Kitamori
Journal:  Anal Chem       Date:  2001-08-15       Impact factor: 6.986

2.  Temperature measurement in microfluidic systems using a temperature-dependent fluorescent dye.

Authors:  D Ross; M Gaitan; L E Locascio
Journal:  Anal Chem       Date:  2001-09-01       Impact factor: 6.986

3.  Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA.

Authors:  Laura E Bartley; Xiaowei Zhuang; Rhiju Das; Steven Chu; Daniel Herschlag
Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

4.  Wedge shaped cell for highly absorbent liquids: infrared optical constants of water.

Authors:  D M Wieliczka; S Weng; M R Querry
Journal:  Appl Opt       Date:  1989-05-01       Impact factor: 1.980

5.  Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker.

Authors:  Christopher D Downey; Julie L Fiore; Colby D Stoddard; Jose H Hodak; David J Nesbitt; Arthur Pardi
Journal:  Biochemistry       Date:  2006-03-21       Impact factor: 3.162

6.  Single quantum dots as local temperature markers.

Authors:  Sha Li; Kai Zhang; Jui-Ming Yang; Liwei Lin; Haw Yang
Journal:  Nano Lett       Date:  2007-08-30       Impact factor: 11.189

7.  Protein folding stability and dynamics imaged in a living cell.

Authors:  Simon Ebbinghaus; Apratim Dhar; J Douglas McDonald; Martin Gruebele
Journal:  Nat Methods       Date:  2010-02-28       Impact factor: 28.547

8.  Removal of background signals from fluorescence thermometry measurements in PDMS microchannels using fluorescence lifetime imaging.

Authors:  Tom Robinson; Yolanda Schaerli; Robert Wootton; Florian Hollfelder; Christopher Dunsby; Geoff Baldwin; Mark Neil; Paul French; Andrew deMello
Journal:  Lab Chip       Date:  2009-09-24       Impact factor: 6.799

9.  Enthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.

Authors:  Julie L Fiore; Benedikt Kraemer; Felix Koberling; Rainer Edmann; David J Nesbitt
Journal:  Biochemistry       Date:  2009-03-24       Impact factor: 3.162

10.  Conformational flexibility of four-way junctions in RNA.

Authors:  Sungchul Hohng; Timothy J Wilson; Elliot Tan; Robert M Clegg; David M J Lilley; Taekjip Ha
Journal:  J Mol Biol       Date:  2004-02-06       Impact factor: 5.469

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  7 in total

1.  Single-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helices.

Authors:  Nicholas F Dupuis; Erik D Holmstrom; David J Nesbitt
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

2.  A Temperature-Jump Optical Trap for Single-Molecule Manipulation.

Authors:  Sara de Lorenzo; Marco Ribezzi-Crivellari; J Ricardo Arias-Gonzalez; Steven B Smith; Felix Ritort
Journal:  Biophys J       Date:  2015-06-16       Impact factor: 4.033

3.  Thermodynamic origins of monovalent facilitated RNA folding.

Authors:  Erik D Holmstrom; Julie L Fiore; David J Nesbitt
Journal:  Biochemistry       Date:  2012-04-23       Impact factor: 3.162

4.  Pulsed IR heating studies of single-molecule DNA duplex dissociation kinetics and thermodynamics.

Authors:  Erik D Holmstrom; Nicholas F Dupuis; David J Nesbitt
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

5.  Temperature-Jump 2D IR Spectroscopy with Intensity-Modulated CW Optical Heating.

Authors:  Brennan Ashwood; Nicholas H C Lewis; Paul J Sanstead; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-09-21       Impact factor: 2.991

Review 6.  Established and novel methods of interrogating two-dimensional cell migration.

Authors:  William J Ashby; Andries Zijlstra
Journal:  Integr Biol (Camb)       Date:  2012-11       Impact factor: 2.192

7.  Temperature sculpting in yoctoliter volumes.

Authors:  Joseph E Reiner; Joseph W F Robertson; Daniel L Burden; Lisa K Burden; Arvind Balijepalli; John J Kasianowicz
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

  7 in total

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