Literature DB >> 32902979

Temperature-Jump 2D IR Spectroscopy with Intensity-Modulated CW Optical Heating.

Brennan Ashwood1, Nicholas H C Lewis1, Paul J Sanstead1, Andrei Tokmakoff1.   

Abstract

Pulsed temperature-jump (T-jump) spectroscopy with infrared (IR) detection has been widely used to study biophysical processes occurring from nanoseconds to ∼1 ms with structural sensitivity. However, many systems exhibit structural dynamics on time scales longer than the millisecond barrier that is set by the time scale for thermal relaxation of the sample. We developed a linear and nonlinear infrared spectrometer coupled to an intensity-modulated continuous wave (CW) laser to probe T-jump-initiated chemical reactions from <1 ms to seconds. Time-dependent modulation of the CW laser leads to a <1 ms heating time as well as a constant final temperature (±3%) for the duration of the heating time. Temperature changes of up to 75 °C in D2O are demonstrated, allowing for nonequilibrium measurements inaccessible to standard pulsed optical T-jump setups. T-jump linear absorption, pump-probe, and two-dimensional IR (2D IR) spectroscopy are applied to the unfolding and refolding of ubiquitin and a model intercalated motif (i-motif) DNA sequence, and analysis of the observed signals is used to demonstrate the limits and utility of each method. Overall, the ability to probe temperature-induced chemical processes from <1 ms to many seconds with 2D IR spectroscopy provides multiple new avenues for time-dependent spectroscopy in chemistry and biophysics.

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Year:  2020        PMID: 32902979      PMCID: PMC7850621          DOI: 10.1021/acs.jpcb.0c07177

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  59 in total

1.  Folding at the speed limit.

Authors:  Wei Yuan Yang; Martin Gruebele
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

2.  Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain.

Authors:  Scott H Brewer; Dung M Vu; Yuefeng Tang; Ying Li; Stefan Franzen; Daniel P Raleigh; R Brian Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-03       Impact factor: 11.205

3.  Vibrational circular dichroism signature of hemiprotonated intercalated four-stranded i-DNA.

Authors:  D Tsankov; M Krasteva; V Andrushchenko; J H van de Sande; H Wieser
Journal:  Biophys Chem       Date:  2005-09-23       Impact factor: 2.352

Review 4.  Time-resolved methods in biophysics. 9. Laser temperature-jump methods for investigating biomolecular dynamics.

Authors:  Jan Kubelka
Journal:  Photochem Photobiol Sci       Date:  2009-02-16       Impact factor: 3.982

5.  Monitoring Base-Specific Dynamics during Melting of DNA-Ligand Complexes Using Temperature-Jump Time-Resolved Infrared Spectroscopy.

Authors:  Robby Fritzsch; Gregory M Greetham; Ian P Clark; Lucy Minnes; Michael Towrie; Anthony W Parker; Neil T Hunt
Journal:  J Phys Chem B       Date:  2019-07-16       Impact factor: 2.991

6.  Exploring the energy landscape of nucleic acid hairpins using laser temperature-jump and microfluidic mixing.

Authors:  Ranjani Narayanan; Li Zhu; Yogambigai Velmurugu; Jorjethe Roca; Serguei V Kuznetsov; Gerd Prehna; Lisa J Lapidus; Anjum Ansari
Journal:  J Am Chem Soc       Date:  2012-11-07       Impact factor: 15.419

7.  Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.

Authors:  Kevin C Jones; Chunte Sam Peng; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

8.  Pulsed IR heating studies of single-molecule DNA duplex dissociation kinetics and thermodynamics.

Authors:  Erik D Holmstrom; Nicholas F Dupuis; David J Nesbitt
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

9.  A continuous wave laser T-jump apparatus and its application to chemical reactions in hemoglobin single crystals.

Authors:  H J Steinhoff
Journal:  J Biochem Biophys Methods       Date:  1988-04

10.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

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  1 in total

1.  Resolving Dynamics in the Ensemble: Finding Paths through Intermediate States and Disordered Protein Structures.

Authors:  Adam K Nijhawan; Arnold M Chan; Darren J Hsu; Lin X Chen; Kevin L Kohlstedt
Journal:  J Phys Chem B       Date:  2021-11-08       Impact factor: 3.466

  1 in total

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