Literature DB >> 20190760

Protein folding stability and dynamics imaged in a living cell.

Simon Ebbinghaus1, Apratim Dhar, J Douglas McDonald, Martin Gruebele.   

Abstract

Biomolecular dynamics and stability are predominantly investigated in vitro and extrapolated to explain function in the living cell. We present fast relaxation imaging (FreI), which combines fluorescence microscopy and temperature jumps to probe biomolecular dynamics and stability inside a single living cell with high spatiotemporal resolution. We demonstrated the method by measuring the reversible fast folding kinetics as well as folding thermodynamics of a fluorescence resonance energy transfer (FRET) probe-labeled phosphoglycerate kinase construct in two human cell lines. Comparison with in vitro experiments at 23-49 degrees C showed that the cell environment influences protein stability and folding rate. FReI should also be applicable to the study of protein-protein interactions and heat-shock responses as well as to comparative studies of cell populations or whole organisms.

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Year:  2010        PMID: 20190760     DOI: 10.1038/nmeth.1435

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  28 in total

1.  High-resolution macromolecular NMR spectroscopy inside living cells.

Authors:  Z Serber; A T Keatinge-Clay; R Ledwidge; A E Kelly; S M Miller; V Dötsch
Journal:  J Am Chem Soc       Date:  2001-03-14       Impact factor: 15.419

2.  Tuning the heterogeneous early folding dynamics of phosphoglycerate kinase.

Authors:  Szabolcs Osváth; Jobiah J Sabelko; Martin Gruebele
Journal:  J Mol Biol       Date:  2003-10-10       Impact factor: 5.469

3.  Hierarchic finite level energy landscape model: to describe the refolding kinetics of phosphoglycerate kinase.

Authors:  Szabolcs Osváth; Levente Herényi; Péter Závodszky; Judit Fidy; Gottfried Köhler
Journal:  J Biol Chem       Date:  2006-06-28       Impact factor: 5.157

4.  Effective elimination of laser interference fringing in fluorescence microscopy by spinning azimuthal incidence angle.

Authors:  Alexa L Mattheyses; Keith Shaw; Daniel Axelrod
Journal:  Microsc Res Tech       Date:  2006-08       Impact factor: 2.769

5.  From the test tube to the cell: exploring the folding and aggregation of a beta-clam protein.

Authors:  Zoya Ignatova; Beena Krishnan; Jeffrey P Bombardier; Anna Marie C Marcelino; Jiang Hong; Lila M Gierasch
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

6.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

7.  Infrared laser-mediated gene induction in targeted single cells in vivo.

Authors:  Yasuhiro Kamei; Motoshi Suzuki; Kenjiro Watanabe; Kazuhiro Fujimori; Takashi Kawasaki; Tomonori Deguchi; Yoshihiro Yoneda; Takeshi Todo; Shin Takagi; Takashi Funatsu; Shunsuke Yuba
Journal:  Nat Methods       Date:  2008-12-14       Impact factor: 28.547

8.  Exploring the roles of noise in the eukaryotic cell cycle.

Authors:  Sandip Kar; William T Baumann; Mark R Paul; John J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

9.  Speckle-free image in a laser-diode microscope by using the optical feedback effect.

Authors:  B Dingel; S Kawata
Journal:  Opt Lett       Date:  1993-04-01       Impact factor: 3.776

10.  19F NMR measurements of the rotational mobility of proteins in vivo.

Authors:  S P Williams; P M Haggie; K M Brindle
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

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  76 in total

1.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Protein-binding dynamics imaged in a living cell.

Authors:  Yael Phillip; Vladimir Kiss; Gideon Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

3.  Photothermic regulation of gene expression triggered by laser-induced carbon nanohorns.

Authors:  Eijiro Miyako; Tomonori Deguchi; Yoshihiro Nakajima; Masako Yudasaka; Yoshihisa Hagihara; Masanori Horie; Mototada Shichiri; Yuriko Higuchi; Fumiyoshi Yamashita; Mitsuru Hashida; Yasushi Shigeri; Yasukazu Yoshida; Sumio Iijima
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

4.  Temperature dependence of protein folding kinetics in living cells.

Authors:  Minghao Guo; Yangfan Xu; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

5.  Biological imaging with 4D ultrafast electron microscopy.

Authors:  David J Flannigan; Brett Barwick; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-17       Impact factor: 11.205

6.  The diffusion coefficient for PGK folding in eukaryotic cells.

Authors:  Apratim Dhar; Simon Ebbinghaus; Zhen Shen; Tripta Mishra; Martin Gruebele
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

7.  Protein-binding assays in biological liquids using microscale thermophoresis.

Authors:  Christoph J Wienken; Philipp Baaske; Ulrich Rothbauer; Dieter Braun; Stefan Duhr
Journal:  Nat Commun       Date:  2010-10-19       Impact factor: 14.919

8.  Single in the (Cell) City: a protein-folding story.

Authors:  Anne Plochowietz; Achillefs N Kapanidis
Journal:  Nat Methods       Date:  2015-08       Impact factor: 28.547

9.  In-cell thermodynamics and a new role for protein surfaces.

Authors:  Austin E Smith; Larry Z Zhou; Annelise H Gorensek; Michael Senske; Gary J Pielak
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-11       Impact factor: 11.205

Review 10.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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