Literature DB >> 23347384

Temperature sculpting in yoctoliter volumes.

Joseph E Reiner1, Joseph W F Robertson, Daniel L Burden, Lisa K Burden, Arvind Balijepalli, John J Kasianowicz.   

Abstract

The ability to perturb large ensembles of molecules from equilibrium led to major advances in understanding reaction mechanisms in chemistry and biology. Here, we demonstrate the ability to control, measure, and make use of rapid temperature changes in fluid volumes that are commensurate with the size of single molecules. The method is based on attaching gold nanoparticles to a single nanometer-scale pore formed by a protein ion channel. Visible laser light incident on the nanoparticles causes a rapid and large increase of the adjacent solution temperature, which is estimated from the change in the nanopore ionic conductance. The temperature shift also affects the ability of individual molecules to enter into and interact with the nanopore. This technique could significantly improve sensor systems and force measurements based on single nanopores, thereby enabling a method for single molecule thermodynamics and kinetics.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23347384      PMCID: PMC3892765          DOI: 10.1021/ja309892e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  77 in total

1.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

2.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

3.  Protein electrostriction: a possibility of elastic deformation of the alpha-hemolysin channel by the applied field.

Authors:  Oleg V Krasilnikov; Petr G Merzlyak; Liliya N Yuldasheva; Maria F Capistrano
Journal:  Eur Biophys J       Date:  2005-07-15       Impact factor: 1.733

4.  Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.

Authors:  Jérôme Mathé; Aleksei Aksimentiev; David R Nelson; Klaus Schulten; Amit Meller
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-19       Impact factor: 11.205

5.  Contour length and refolding rate of a small protein controlled by engineered disulfide bonds.

Authors:  Sri Rama Koti Ainavarapu; Jasna Brujic; Hector H Huang; Arun P Wiita; Hui Lu; Lewyn Li; Kirstin A Walther; Mariano Carrion-Vazquez; Hongbin Li; Julio M Fernandez
Journal:  Biophys J       Date:  2006-10-06       Impact factor: 4.033

Review 6.  Micro- and nanofluidic systems for high-throughput biological screening.

Authors:  Jongin Hong; Joshua B Edel; Andrew J deMello
Journal:  Drug Discov Today       Date:  2008-12-04       Impact factor: 7.851

7.  Numerical investigation of heating of a gold nanoparticle and the surrounding microenvironment by nanosecond laser pulses for nanomedicine applications.

Authors:  E Sassaroli; K C P Li; B E O'Neill
Journal:  Phys Med Biol       Date:  2009-08-28       Impact factor: 3.609

8.  Ionic channels formed by Staphylococcus aureus alpha-toxin: voltage-dependent inhibition by divalent and trivalent cations.

Authors:  G Menestrina
Journal:  J Membr Biol       Date:  1986       Impact factor: 1.843

9.  Stopped-flow circular dichroism: a new fast-kinetic system.

Authors:  P M Bayley; M Anson
Journal:  Biopolymers       Date:  1974       Impact factor: 2.505

10.  Monitoring the escape of DNA from a nanopore using an alternating current signal.

Authors:  Daniel K Lathrop; Eric N Ervin; Geoffrey A Barrall; Michael G Keehan; Ryuji Kawano; Michael A Krupka; Henry S White; Andrew H Hibbs
Journal:  J Am Chem Soc       Date:  2010-02-17       Impact factor: 15.419

View more
  14 in total

1.  Modeling thermophoretic effects in solid-state nanopores.

Authors:  Maxim Belkin; Shu-Han Chao; Gino Giannetti; Aleksei Aksimentiev
Journal:  J Comput Electron       Date:  2014-12-01       Impact factor: 1.807

2.  Nanopore Sensing of Protein Folding.

Authors:  Wei Si; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2017-07-13       Impact factor: 15.881

3.  Construction of an aerolysin nanopore in a lipid bilayer for single-oligonucleotide analysis.

Authors:  Chan Cao; Dong-Fang Liao; Jie Yu; He Tian; Yi-Tao Long
Journal:  Nat Protoc       Date:  2017-08-24       Impact factor: 13.491

Review 4.  Localized Nanopore Fabrication via Controlled Breakdown.

Authors:  Cuifeng Ying; Tianji Ma; Lei Xu; Mohsen Rahmani
Journal:  Nanomaterials (Basel)       Date:  2022-07-12       Impact factor: 5.719

5.  Stretching and controlled motion of single-stranded DNA in locally heated solid-state nanopores.

Authors:  Maxim Belkin; Christopher Maffeo; David B Wells; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2013-07-26       Impact factor: 15.881

6.  Unfolding Kinetics of the Human Telomere i-Motif Under a 10 pN Force Imposed by the α-Hemolysin Nanopore Identify Transient Folded-State Lifetimes at Physiological pH.

Authors:  Yun Ding; Aaron M Fleming; Lidong He; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2015-07-09       Impact factor: 15.419

7.  Placement of oppositely charged aminoacids at a polypeptide termini determines the voltage-controlled braking of polymer transport through nanometer-scale pores.

Authors:  Alina Asandei; Mauro Chinappi; Jong-Kook Lee; Chang Ho Seo; Loredana Mereuta; Yoonkyung Park; Tudor Luchian
Journal:  Sci Rep       Date:  2015-06-01       Impact factor: 4.379

8.  DNA translocations through solid-state plasmonic nanopores.

Authors:  Francesca Nicoli; Daniel Verschueren; Misha Klein; Cees Dekker; Magnus P Jonsson
Journal:  Nano Lett       Date:  2014-11-07       Impact factor: 11.189

9.  Molecular Dynamics Simulation of DNA Capture and Transport in Heated Nanopores.

Authors:  Maxim Belkin; Aleksei Aksimentiev
Journal:  ACS Appl Mater Interfaces       Date:  2016-03-21       Impact factor: 9.229

10.  Plasmonic Nanopores for Trapping, Controlling Displacement, and Sequencing of DNA.

Authors:  Maxim Belkin; Shu-Han Chao; Magnus P Jonsson; Cees Dekker; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2015-10-01       Impact factor: 15.881

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.