Literature DB >> 21788505

Architecture, constraints, and behavior.

John C Doyle1, Marie Csete.   

Abstract

This paper aims to bridge progress in neuroscience involving sophisticated quantitative analysis of behavior, including the use of robust control, with other relevant conceptual and theoretical frameworks from systems engineering, systems biology, and mathematics. Familiar and accessible case studies are used to illustrate concepts of robustness, organization, and architecture (modularity and protocols) that are central to understanding complex networks. These essential organizational features are hidden during normal function of a system but are fundamental for understanding the nature, design, and function of complex biologic and technologic systems.

Mesh:

Year:  2011        PMID: 21788505      PMCID: PMC3176601          DOI: 10.1073/pnas.1103557108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

Review 1.  Reverse engineering of biological complexity.

Authors:  Marie E Csete; John C Doyle
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

Review 2.  Neural mechanisms for interacting with a world full of action choices.

Authors:  Paul Cisek; John F Kalaska
Journal:  Annu Rev Neurosci       Date:  2010       Impact factor: 12.449

3.  Understanding complexity in the human brain.

Authors:  Danielle S Bassett; Michael S Gazzaniga
Journal:  Trends Cogn Sci       Date:  2011-04-14       Impact factor: 20.229

4.  Falsified papers in high-impact journals were slow to retract and indistinguishable from nonfraudulent papers.

Authors:  Nikolaos A Trikalinos; Evangelos Evangelou; John P A Ioannidis
Journal:  J Clin Epidemiol       Date:  2008-05       Impact factor: 6.437

Review 5.  Evolvability.

Authors:  M Kirschner; J Gerhart
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

Review 6.  Variability, compensation, and modulation in neurons and circuits.

Authors:  Eve Marder
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

7.  Glycolytic oscillations and limits on robust efficiency.

Authors:  Fiona A Chandra; Gentian Buzi; John C Doyle
Journal:  Science       Date:  2011-07-08       Impact factor: 47.728

8.  Colloquium paper: the cognitive niche: coevolution of intelligence, sociality, and language.

Authors:  Steven Pinker
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-05       Impact factor: 11.205

9.  Risk-sensitive optimal feedback control accounts for sensorimotor behavior under uncertainty.

Authors:  Arne J Nagengast; Daniel A Braun; Daniel M Wolpert
Journal:  PLoS Comput Biol       Date:  2010-07-15       Impact factor: 4.475

10.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613

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  37 in total

1.  Systematic and systemic immunology: on the future of research and its applications.

Authors:  Philippe Kourilsky
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

Review 2.  Regulating cellular cyclic adenosine monophosphate: "Sources," "sinks," and now, "tunable valves".

Authors:  Michael Getz; Padmini Rangamani; Pradipta Ghosh
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2020-04-23

3.  Coordination of Orofacial Motor Actions into Exploratory Behavior by Rat.

Authors:  Anastasia Kurnikova; Jeffrey D Moore; Song-Mao Liao; Martin Deschênes; David Kleinfeld
Journal:  Curr Biol       Date:  2017-02-16       Impact factor: 10.834

Review 4.  Cortical high-density counterstream architectures.

Authors:  Kenneth Knoblauch; Zoltán Toroczkai; Henry Kennedy; Nikola T Markov; Mária Ercsey-Ravasz; David C Van Essen
Journal:  Science       Date:  2013-11-01       Impact factor: 47.728

5.  Quantification of behavior.

Authors:  Alan Leshner; Donald W Pfaff
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-13       Impact factor: 11.205

6.  Travel in city road networks follows similar transport trade-off principles to neural and plant arbors.

Authors:  Jonathan Y Suen; Saket Navlakha
Journal:  J R Soc Interface       Date:  2019-05-31       Impact factor: 4.118

7.  Optimal feedback control to describe multiple representations of primary motor cortex neurons.

Authors:  Yuki Ueyama
Journal:  J Comput Neurosci       Date:  2017-06-01       Impact factor: 1.621

8.  Robust efficiency and actuator saturation explain healthy heart rate control and variability.

Authors:  Na Li; Jerry Cruz; Chenghao Simon Chien; Somayeh Sojoudi; Benjamin Recht; David Stone; Marie Csete; Daniel Bahmiller; John C Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2014-08-04       Impact factor: 11.205

9.  Of plasticity and specificity: dialectics of the micro- and macro-environment and the organ phenotype.

Authors:  Ramray Bhat; Mina J Bissell
Journal:  Wiley Interdiscip Rev Membr Transp Signal       Date:  2014

Review 10.  Hypoxia-induced phrenic long-term facilitation: emergent properties.

Authors:  Michael J Devinney; Adrianne G Huxtable; Nicole L Nichols; Gordon S Mitchell
Journal:  Ann N Y Acad Sci       Date:  2013-03       Impact factor: 5.691

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