Literature DB >> 21737735

Glycolytic oscillations and limits on robust efficiency.

Fiona A Chandra1, Gentian Buzi, John C Doyle.   

Abstract

Both engineering and evolution are constrained by trade-offs between efficiency and robustness, but theory that formalizes this fact is limited. For a simple two-state model of glycolysis, we explicitly derive analytic equations for hard trade-offs between robustness and efficiency with oscillations as an inevitable side effect. The model describes how the trade-offs arise from individual parameters, including the interplay of feedback control with autocatalysis of network products necessary to power and catalyze intermediate reactions. We then use control theory to prove that the essential features of these hard trade-off "laws" are universal and fundamental, in that they depend minimally on the details of this system and generalize to the robust efficiency of any autocatalytic network. The theory also suggests worst-case conditions that are consistent with initial experiments.

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Year:  2011        PMID: 21737735     DOI: 10.1126/science.1200705

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  53 in total

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Review 3.  Architecture, constraints, and behavior.

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4.  Is a constant low-entropy process at the root of glycolytic oscillations?

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Journal:  J Biol Phys       Date:  2018-05-24       Impact factor: 1.365

Review 5.  The algorithmic origins of life.

Authors:  Sara Imari Walker; Paul C W Davies
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6.  Robust efficiency and actuator saturation explain healthy heart rate control and variability.

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Review 7.  Understanding the physiology of the ageing individual: computational modelling of changes in metabolism and endurance.

Authors:  Johannes H G M van Beek; Thomas B L Kirkwood; James B Bassingthwaighte
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8.  Allosteric proteins as logarithmic sensors.

Authors:  Noah Olsman; Lea Goentoro
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-07       Impact factor: 11.205

Review 9.  Engineering control into medicine.

Authors:  David J Stone; Leo Anthony Celi; Marie Csete
Journal:  J Crit Care       Date:  2015-01-30       Impact factor: 3.425

10.  Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity.

Authors:  Ed Reznik; Dimitris Christodoulou; Joshua E Goldford; Emma Briars; Uwe Sauer; Daniel Segrè; Elad Noor
Journal:  Cell Rep       Date:  2017-09-12       Impact factor: 9.423

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