Literature DB >> 25911498

Hydrogen bond donation to the heme distal ligand of Staphylococcus aureus IsdG tunes the electronic structure.

Cheryl L Lockhart1, Matthew A Conger, Dylanger S Pittman, Matthew D Liptak.   

Abstract

Staphylococcus aureus IsdG catalyzes the final step of staphylococcal iron acquisition from host hemoglobin, whereby host-derived heme is converted to iron and organic products. The Asn7 distal pocket residue is known to be critical for enzyme activity, but the influence of this residue on the substrate electronic structure was unknown prior to this work. Here, an optical spectroscopic and density functional theory characterization of azide- and cyanide-inhibited wild type and N7A IsdG is presented. Magnetic circular dichroism data demonstrate that Asn7 perturbs the electronic structure of azide-inhibited, but not cyanide-inhibited, IsdG. As the iron-ligating α-atom of azide, but not cyanide, can act as a hydrogen bond acceptor, these data indicate that the terminal amide of Asn7 is a hydrogen bond donor to the α-atom of a distal ligand to heme in IsdG. Circular dichroism characterization of azide- and cyanide-inhibited forms of WT and N7A IsdG strongly suggests that the Asn7···N3 hydrogen bond influences the orientation of a distal azide ligand with respect to the heme substrate. Specifically, density functional theory calculations suggest that Asn7···N3 hydrogen bond donation causes the azide ligand to rotate about an axis perpendicular to the porphyrin plane and weakens the π-donor strength of the azide ligand. This lowers the energies of the Fe 3d xz and 3d yz orbitals, mixes Fe 3d xy and porphyrin a 2u character into the singly-occupied molecular orbital, and results in spin delocalization onto the heme meso carbons. These discoveries have important implications for the mechanism of heme oxygenation catalyzed by IsdG.

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Year:  2015        PMID: 25911498     DOI: 10.1007/s00775-015-1263-5

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  45 in total

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Authors:  Jessica D Gardner; Li Yi; Stephen W Ragsdale; Thomas C Brunold
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3.  Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.

Authors:  R B Kapust; J Tözsér; J D Fox; D E Anderson; S Cherry; T D Copeland; D S Waugh
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4.  The IsdG-family of haem oxygenases degrades haem to a novel chromophore.

Authors:  Michelle L Reniere; Georgia N Ukpabi; S Reese Harry; Donald F Stec; Robert Krull; David W Wright; Brian O Bachmann; Michael E Murphy; Eric P Skaar
Journal:  Mol Microbiol       Date:  2010-02-17       Impact factor: 3.501

5.  Models of the low-spin iron(III) hydroperoxide intermediate of heme oxygenase: magnetic resonance evidence for thermodynamic stabilization of the d(xy) electronic state at ambient temperatures.

Authors:  Mario Rivera; Gregori A Caignan; Andrei V Astashkin; Arnold M Raitsimring; Tatjana Kh Shokhireva; F Ann Walker
Journal:  J Am Chem Soc       Date:  2002-05-29       Impact factor: 15.419

6.  Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide. Implication for regiospecific hydroxylation of heme at the alpha-meso carbon.

Authors:  Masakazu Sugishima; Hiroshi Sakamoto; Yuichiro Higashimoto; Yoshiaki Omata; Shunsuke Hayashi; Masato Noguchi; Keiichi Fukuyama
Journal:  J Biol Chem       Date:  2002-09-15       Impact factor: 5.157

7.  Backbone NMR assignments and H/D exchange studies on the ferric azide- and cyanide-inhibited forms of Pseudomonas aeruginosa heme oxygenase.

Authors:  Juan Carlos Rodríguez; Angela Wilks; Mario Rivera
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

8.  Heme oxygenase-2. Properties of the heme complex of the purified tryptic fragment of recombinant human heme oxygenase-2.

Authors:  K Ishikawa; N Takeuchi; S Takahashi; K M Matera; M Sato; S Shibahara; D L Rousseau; M Ikeda-Saito; T Yoshida
Journal:  J Biol Chem       Date:  1995-03-17       Impact factor: 5.157

9.  Solution NMR characterization of an unusual distal H-bond network in the active site of the cyanide-inhibited, human heme oxygenase complex of the symmetric substrate, 2,4-dimethyldeuterohemin.

Authors:  Yiming Li; Ray T Syvitski; Karine Auclair; Angela Wilks; Paul R Ortiz De Montellano; Gerd N La Mar
Journal:  J Biol Chem       Date:  2002-06-17       Impact factor: 5.157

10.  Inactivation of the heme degrading enzyme IsdI by an active site substitution that diminishes heme ruffling.

Authors:  Georgia Ukpabi; Shin-ichi J Takayama; A Grant Mauk; Michael E P Murphy
Journal:  J Biol Chem       Date:  2012-08-13       Impact factor: 5.157

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  4 in total

1.  Tight binding of heme to Staphylococcus aureus IsdG and IsdI precludes design of a competitive inhibitor.

Authors:  Matthew A Conger; Deepika Pokhrel; Matthew D Liptak
Journal:  Metallomics       Date:  2017-05-24       Impact factor: 4.526

2.  Spectroscopic Evidence for Electronic Control of Heme Hydroxylation by IsdG.

Authors:  Matthew A Conger; Amanda R Cornetta; Matthew D Liptak
Journal:  Inorg Chem       Date:  2019-11-06       Impact factor: 5.165

3.  Ruffling is essential for Staphylococcus aureus IsdG-catalyzed degradation of heme to staphylobilin.

Authors:  Ariel E Schuelke-Sanchez; Amanda R Cornetta; Taylor A J Kocian; Matthew A Conger; Matthew D Liptak
Journal:  J Inorg Biochem       Date:  2022-02-25       Impact factor: 4.336

Review 4.  Iron Metabolism at the Interface between Host and Pathogen: From Nutritional Immunity to Antibacterial Development.

Authors:  Marialaura Marchetti; Omar De Bei; Stefano Bettati; Barbara Campanini; Sandra Kovachka; Eleonora Gianquinto; Francesca Spyrakis; Luca Ronda
Journal:  Int J Mol Sci       Date:  2020-03-20       Impact factor: 5.923

  4 in total

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