Literature DB >> 21787120

Defining genome maintenance pathways using functional genomic approaches.

Carol E Bansbach1, David Cortez.   

Abstract

Genome maintenance activities including DNA repair, cell division cycle control, and checkpoint signaling pathways preserve genome integrity and prevent disease. Defects in these pathways cause birth defects, neurodegeneration, premature aging, and cancer. Recent technical advances in functional genomic approaches such as expression profiling, proteomics, and RNA interference (RNAi) technologies have rapidly expanded our knowledge of the proteins that work in these pathways. In this review, we examine the use of these high-throughput methodologies in higher eukaryotic organisms for the interrogation of genome maintenance activities.

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Year:  2011        PMID: 21787120      PMCID: PMC3144553          DOI: 10.3109/10409238.2011.588938

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  106 in total

1.  Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays.

Authors:  Yifat Merbl; Marc W Kirschner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

2.  RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.

Authors:  Carsten Doil; Niels Mailand; Simon Bekker-Jensen; Patrice Menard; Dorthe Helena Larsen; Rainer Pepperkok; Jan Ellenberg; Stephanie Panier; Daniel Durocher; Jiri Bartek; Jiri Lukas; Claudia Lukas
Journal:  Cell       Date:  2009-02-06       Impact factor: 41.582

Review 3.  Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity.

Authors:  James E Cleaver; Ernest T Lam; Ingrid Revet
Journal:  Nat Rev Genet       Date:  2009-10-07       Impact factor: 53.242

Review 4.  Histones: annotating chromatin.

Authors:  Eric I Campos; Danny Reinberg
Journal:  Annu Rev Genet       Date:  2009       Impact factor: 16.830

5.  Functional genomic screens identify CINP as a genome maintenance protein.

Authors:  Courtney A Lovejoy; Xin Xu; Carol E Bansbach; Gloria G Glick; Runxiang Zhao; Fei Ye; Bianca M Sirbu; Laura C Titus; Yu Shyr; David Cortez
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-04       Impact factor: 11.205

6.  Purification of proteins associated with specific genomic Loci.

Authors:  Jérôme Déjardin; Robert E Kingston
Journal:  Cell       Date:  2009-01-09       Impact factor: 41.582

7.  The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage.

Authors:  Grant S Stewart; Stephanie Panier; Kelly Townsend; Abdallah K Al-Hakim; Nadine K Kolas; Edward S Miller; Shinichiro Nakada; Jarkko Ylanko; Signe Olivarius; Megan Mendez; Ceri Oldreive; Jan Wildenhain; Andrea Tagliaferro; Laurence Pelletier; Nadine Taubenheim; Anne Durandy; Philip J Byrd; Tatjana Stankovic; A Malcolm R Taylor; Daniel Durocher
Journal:  Cell       Date:  2009-02-06       Impact factor: 41.582

Review 8.  GammaH2AX and cancer.

Authors:  William M Bonner; Christophe E Redon; Jennifer S Dickey; Asako J Nakamura; Olga A Sedelnikova; Stéphanie Solier; Yves Pommier
Journal:  Nat Rev Cancer       Date:  2008-11-13       Impact factor: 60.716

9.  A high-throughput RNA interference screen for DNA repair determinants of PARP inhibitor sensitivity.

Authors:  Christopher J Lord; Sarah McDonald; Sally Swift; Nicholas C Turner; Alan Ashworth
Journal:  DNA Repair (Amst)       Date:  2008-10-15

10.  53BP1 facilitates long-range DNA end-joining during V(D)J recombination.

Authors:  Simone Difilippantonio; Eric Gapud; Nancy Wong; Ching-Yu Huang; Grace Mahowald; Hua Tang Chen; Michael J Kruhlak; Elsa Callen; Ferenc Livak; Michel C Nussenzweig; Barry P Sleckman; André Nussenzweig
Journal:  Nature       Date:  2008-10-19       Impact factor: 49.962

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  2 in total

Review 1.  Genome maintenance and human longevity.

Authors:  Miook Cho; Yousin Suh
Journal:  Curr Opin Genet Dev       Date:  2014-08-28       Impact factor: 5.578

Review 2.  DNA damage response: three levels of DNA repair regulation.

Authors:  Bianca M Sirbu; David Cortez
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

  2 in total

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