Literature DB >> 23813586

DNA damage response: three levels of DNA repair regulation.

Bianca M Sirbu1, David Cortez.   

Abstract

Genome integrity is challenged by DNA damage from both endogenous and environmental sources. This damage must be repaired to allow both RNA and DNA polymerases to accurately read and duplicate the information in the genome. Multiple repair enzymes scan the DNA for problems, remove the offending damage, and restore the DNA duplex. These repair mechanisms are regulated by DNA damage response kinases including DNA-PKcs, ATM, and ATR that are activated at DNA lesions. These kinases improve the efficiency of DNA repair by phosphorylating repair proteins to modify their activities, by initiating a complex series of changes in the local chromatin structure near the damage site, and by altering the overall cellular environment to make it more conducive to repair. In this review, we focus on these three levels of regulation to illustrate how the DNA damage kinases promote efficient repair to maintain genome integrity and prevent disease.

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Year:  2013        PMID: 23813586      PMCID: PMC3721278          DOI: 10.1101/cshperspect.a012724

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  146 in total

1.  The Fanconi anemia protein FANCM can promote branch migration of Holliday junctions and replication forks.

Authors:  Kerstin Gari; Chantal Décaillet; Alicja Z Stasiak; Andrzej Stasiak; Angelos Constantinou
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

2.  RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins.

Authors:  Niels Mailand; Simon Bekker-Jensen; Helene Faustrup; Fredrik Melander; Jiri Bartek; Claudia Lukas; Jiri Lukas
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

3.  RNF8 transduces the DNA-damage signal via histone ubiquitylation and checkpoint protein assembly.

Authors:  Michael S Y Huen; Robert Grant; Isaac Manke; Kay Minn; Xiaochun Yu; Michael B Yaffe; Junjie Chen
Journal:  Cell       Date:  2007-11-20       Impact factor: 41.582

4.  Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks.

Authors:  Haico van Attikum; Olivier Fritsch; Susan M Gasser
Journal:  EMBO J       Date:  2007-08-30       Impact factor: 11.598

5.  Phosphorylation-dependent interactions of BLM and 53BP1 are required for their anti-recombinogenic roles during homologous recombination.

Authors:  Vivek Tripathi; Sarabpreet Kaur; Sagar Sengupta
Journal:  Carcinogenesis       Date:  2007-11-04       Impact factor: 4.944

6.  MCPH1 functions in an H2AX-dependent but MDC1-independent pathway in response to DNA damage.

Authors:  Jamie L Wood; Namit Singh; Georges Mer; Junjie Chen
Journal:  J Biol Chem       Date:  2007-10-09       Impact factor: 5.157

7.  Orchestration of the DNA-damage response by the RNF8 ubiquitin ligase.

Authors:  Nadine K Kolas; J Ross Chapman; Shinichiro Nakada; Jarkko Ylanko; Richard Chahwan; Frédéric D Sweeney; Stephanie Panier; Megan Mendez; Jan Wildenhain; Timothy M Thomson; Laurence Pelletier; Stephen P Jackson; Daniel Durocher
Journal:  Science       Date:  2007-11-15       Impact factor: 47.728

8.  The ubiquitin-interacting motif containing protein RAP80 interacts with BRCA1 and functions in DNA damage repair response.

Authors:  Jun Yan; Yong-Sik Kim; Xiao-Ping Yang; Li-Ping Li; Grace Liao; Fen Xia; Anton M Jetten
Journal:  Cancer Res       Date:  2007-07-09       Impact factor: 12.701

9.  Tipin is required for stalled replication forks to resume DNA replication after removal of aphidicolin in Xenopus egg extracts.

Authors:  Alessia Errico; Vincenzo Costanzo; Tim Hunt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-10       Impact factor: 11.205

Review 10.  DNA-dependent protein kinase in nonhomologous end joining: a lock with multiple keys?

Authors:  Eric Weterings; David J Chen
Journal:  J Cell Biol       Date:  2007-10-15       Impact factor: 10.539

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  106 in total

Review 1.  How do kinases contribute to tonicity-dependent regulation of the transcription factor NFAT5?

Authors:  Xiaoming Zhou
Journal:  World J Nephrol       Date:  2016-01-06

Review 2.  Replicating damaged DNA in eukaryotes.

Authors:  Nimrat Chatterjee; Wolfram Siede
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-12-01       Impact factor: 10.005

3.  The tail that wags the dog: p12, the smallest subunit of DNA polymerase δ, is degraded by ubiquitin ligases in response to DNA damage and during cell cycle progression.

Authors:  Marietta Y W T Lee; Sufang Zhang; Szu Hua Sharon Lin; Xiaoxiao Wang; Zbigniew Darzynkiewicz; Zhongtao Zhang; Ernest Y C Lee
Journal:  Cell Cycle       Date:  2013-12-03       Impact factor: 4.534

4.  Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Authors:  Bianca M Sirbu; W Hayes McDonald; Huzefa Dungrawala; Akosua Badu-Nkansah; Gina M Kavanaugh; Yaoyi Chen; David L Tabb; David Cortez
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

Review 5.  Crosstalk between ubiquitin and other post-translational modifications on chromatin during double-strand break repair.

Authors:  Yu Zhao; Joshua R Brickner; Mona C Majid; Nima Mosammaparast
Journal:  Trends Cell Biol       Date:  2014-02-23       Impact factor: 20.808

6.  Clonogenic Assays to Detect Cell Fate in Mitotic Catastrophe.

Authors:  José Manuel Bravo-San Pedro; Oliver Kepp; Allan Sauvat; Santiago Rello-Varona; Guido Kroemer; Laura Senovilla
Journal:  Methods Mol Biol       Date:  2021

7.  Aging and Protein Kinases.

Authors:  Ayse Basak Engin; Atilla Engin
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  Chk1 and DNA-PK mediate TPEN-induced DNA damage in a ROS dependent manner in human colon cancer cells.

Authors:  Omar Nasser Rahal; Maamoun Fatfat; Carla Hankache; Bassam Osman; Hala Khalife; Khaled Machaca; Hala-Gali Muhtasib
Journal:  Cancer Biol Ther       Date:  2016-10-03       Impact factor: 4.742

9.  Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases.

Authors:  Anthony Rössl; Amanda Bentley-DeSousa; Yi-Chieh Tseng; Christine Nwosu; Michael Downey
Journal:  Genetics       Date:  2016-08-15       Impact factor: 4.562

Review 10.  The convergence of DNA damage checkpoint pathways and androgen receptor signaling in prostate cancer.

Authors:  Huy Q Ta; Daniel Gioeli
Journal:  Endocr Relat Cancer       Date:  2014-08-05       Impact factor: 5.678

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