Literature DB >> 21767475

Direct measurements of torque during Holliday junction migration.

Scott Forth, Christopher Deufel, Smita S Patel, Michelle D Wang.   

Abstract

DNA experiences torsional stress resulting from the activities of motor enzymes and bound proteins. The mechanisms by which this torsional stress is dissipated to maintain DNA structural integrity are not fully known. Here, we show that a Holliday junction can limit torsion by coupling rotation to translocation and torque to force. The torque required to mechanically migrate through individual junctions was found to be an order of magnitude smaller than that required to melt DNA. We also directly show that substantially more torque was required to migrate through even a single-base sequence heterology, which has important implications for the activity of junction-migrating enzymes.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21767475      PMCID: PMC3136780          DOI: 10.1016/j.bpj.2011.05.066

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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Authors:  T R Strick; D Bensimon; V Croquette
Journal:  Genetica       Date:  1999       Impact factor: 1.082

2.  RuvAB-directed branch migration of individual Holliday junctions is impeded by sequence heterology.

Authors:  Cynthia Dennis; Andrei Fedorov; Emmanuel Käs; Laurence Salomé; Mikhail Grigoriev
Journal:  EMBO J       Date:  2004-05-27       Impact factor: 11.598

3.  Optical torque wrench: angular trapping, rotation, and torque detection of quartz microparticles.

Authors:  Arthur La Porta; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2004-05-14       Impact factor: 9.161

4.  Single-molecule study of RuvAB-mediated Holliday-junction migration.

Authors:  A Dawid; V Croquette; M Grigoriev; F Heslot
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-03       Impact factor: 11.205

Review 5.  RecA-dependent recovery of arrested DNA replication forks.

Authors:  Justin Courcelle; Philip C Hanawalt
Journal:  Annu Rev Genet       Date:  2003       Impact factor: 16.830

6.  Passive torque wrench and angular position detection using a single-beam optical trap.

Authors:  James Inman; Scott Forth; Michelle D Wang
Journal:  Opt Lett       Date:  2010-09-01       Impact factor: 3.776

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Authors:  I G Panyutin; P Hsieh
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-15       Impact factor: 11.205

Review 8.  Biochemistry of homologous recombination in Escherichia coli.

Authors:  S C Kowalczykowski; D A Dixon; A K Eggleston; S D Lauder; W M Rehrauer
Journal:  Microbiol Rev       Date:  1994-09

9.  A pivotal role for the structure of the Holliday junction in DNA branch migration.

Authors:  I G Panyutin; I Biswas; P Hsieh
Journal:  EMBO J       Date:  1995-04-18       Impact factor: 11.598

10.  DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1.

Authors:  Grzegorz Ira; Achille Pellicioli; Alitukiriza Balijja; Xuan Wang; Simona Fiorani; Walter Carotenuto; Giordano Liberi; Debra Bressan; Lihong Wan; Nancy M Hollingsworth; James E Haber; Marco Foiani
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

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  8 in total

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Authors:  Jie Ma; Michelle D Wang
Journal:  Biophys Rev       Date:  2016-07-13

Review 2.  Torque measurement at the single-molecule level.

Authors:  Scott Forth; Maxim Y Sheinin; James Inman; Michelle D Wang
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

3.  Torsional Stiffness of Extended and Plectonemic DNA.

Authors:  Xiang Gao; Yifeng Hong; Fan Ye; James T Inman; Michelle D Wang
Journal:  Phys Rev Lett       Date:  2021-07-09       Impact factor: 9.161

4.  Direct unfolding of RuvA-HJ complex at the single-molecule level.

Authors:  Dalton R Gibbs; Roaa Mahmoud; Anisa Kaur; Soma Dhakal
Journal:  Biophys J       Date:  2021-03-16       Impact factor: 4.033

5.  Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae.

Authors:  Henrik D Møller; Camilla E Larsen; Lance Parsons; Anders Johannes Hansen; Birgitte Regenberg; Tobias Mourier
Journal:  G3 (Bethesda)       Date:  2015-12-17       Impact factor: 3.154

6.  Biocompatible and High Stiffness Nanophotonic Trap Array for Precise and Versatile Manipulation.

Authors:  Fan Ye; Ryan P Badman; James T Inman; Mohammad Soltani; Jessica L Killian; Michelle D Wang
Journal:  Nano Lett       Date:  2016-09-30       Impact factor: 11.189

7.  Mapping of single-base differences between two DNA strands in a single molecule using holliday junction nanomechanics.

Authors:  Camille Brème; François Heslot
Journal:  PLoS One       Date:  2013-02-05       Impact factor: 3.240

8.  Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method.

Authors:  D Hern Paik; Violet A Roskens; Thomas T Perkins
Journal:  Nucleic Acids Res       Date:  2013-08-09       Impact factor: 16.971

  8 in total

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