Literature DB >> 15292508

Single-molecule study of RuvAB-mediated Holliday-junction migration.

A Dawid1, V Croquette, M Grigoriev, F Heslot.   

Abstract

Branch migration of Holliday junctions is an important step of genetic recombination and DNA repair. In Escherichia coli, this process is driven by the RuvAB complex acting as a molecular motor. Using magnetic tweezers, we studied the RuvAB-directed migration of individual Holliday junctions formed between two approximately 6-kb DNA molecules of identical sequence, and we measured the migration rate at 37 degrees C and 1 mM ATP. We directly demonstrate that RuvAB is a highly processive DNA motor protein that is able to drive continuous and unidirectional branch migration of Holliday junctions at a well defined average speed over several kilobases through homologous sequences. We observed directional inversions of the migration at the DNA molecule boundaries leading to forth-and-back migration of the branch point and allowing us to measure the migration rate in the presence of negative or positive loads. The average migration rate at zero load was found to be approximately 43 bp/sec. Furthermore, the load dependence of the migration rate is small, within the force range of -3.4 pN (hindering force) to +3.4 pN (assisting force).

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15292508      PMCID: PMC511028          DOI: 10.1073/pnas.0404369101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer.

Authors:  M Ariyoshi; T Nishino; H Iwasaki; H Shinagawa; K Morikawa
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

2.  Magnetic tweezers: micromanipulation and force measurement at the molecular level.

Authors:  Charlie Gosse; Vincent Croquette
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  The RuvABC resolvasome.

Authors:  Mark J Dickman; Stuart M Ingleston; Svetlana E Sedelnikova; John B Rafferty; Robert G Lloyd; Jane A Grasby; David P Hornby
Journal:  Eur J Biochem       Date:  2002-11

4.  Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration.

Authors:  H Iwasaki; M Takahagi; A Nakata; H Shinagawa
Journal:  Genes Dev       Date:  1992-11       Impact factor: 11.361

5.  Purification and properties of the RuvA and RuvB proteins of Escherichia coli.

Authors:  I R Tsaneva; G Illing; R G Lloyd; S C West
Journal:  Mol Gen Genet       Date:  1992-10

6.  ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli.

Authors:  I R Tsaneva; B Müller; S C West
Journal:  Cell       Date:  1992-06-26       Impact factor: 41.582

7.  SOS-inducible DNA repair proteins, RuvA and RuvB, of Escherichia coli: functional interactions between RuvA and RuvB for ATP hydrolysis and renaturation of the cruciform structure in supercoiled DNA.

Authors:  T Shiba; H Iwasaki; A Nakata; H Shinagawa
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

8.  Formation of a single base mismatch impedes spontaneous DNA branch migration.

Authors:  I G Panyutin; P Hsieh
Journal:  J Mol Biol       Date:  1993-03-20       Impact factor: 5.469

Review 9.  Molecular mechanisms in genetic recombination.

Authors:  D Dressler; H Potter
Journal:  Annu Rev Biochem       Date:  1982       Impact factor: 23.643

10.  Interaction of Escherichia coli RuvA and RuvB proteins with synthetic Holliday junctions.

Authors:  C A Parsons; I Tsaneva; R G Lloyd; S C West
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

View more
  23 in total

1.  Direct observation of DNA rotation during branch migration of Holliday junction DNA by Escherichia coli RuvA-RuvB protein complex.

Authors:  Yong-Woon Han; Tomomi Tani; Masahito Hayashi; Takashi Hishida; Hiroshi Iwasaki; Hideo Shinagawa; Yoshie Harada
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

Review 2.  Single-molecule biophysics: at the interface of biology, physics and chemistry.

Authors:  Ashok A Deniz; Samrat Mukhopadhyay; Edward A Lemke
Journal:  J R Soc Interface       Date:  2008-01-06       Impact factor: 4.118

3.  Elasticity of short DNA molecules: theory and experiment for contour lengths of 0.6-7 microm.

Authors:  Yeonee Seol; Jinyu Li; Philip C Nelson; Thomas T Perkins; M D Betterton
Journal:  Biophys J       Date:  2007-08-31       Impact factor: 4.033

4.  Branch migration enzyme as a Brownian ratchet.

Authors:  Ivan Rasnik; Yong-Joo Jeong; Sean A McKinney; Vaishnavi Rajagopal; Smita S Patel; Taekjip Ha
Journal:  EMBO J       Date:  2008-05-29       Impact factor: 11.598

5.  Direct measurements of torque during Holliday junction migration.

Authors:  Scott Forth; Christopher Deufel; Smita S Patel; Michelle D Wang
Journal:  Biophys J       Date:  2011-07-20       Impact factor: 4.033

6.  Interaction of branch migration translocases with the Holliday junction-resolving enzyme and their implications in Holliday junction resolution.

Authors:  Cristina Cañas; Yuki Suzuki; Chiara Marchisone; Begoña Carrasco; Verónica Freire-Benéitez; Kunio Takeyasu; Juan C Alonso; Silvia Ayora
Journal:  J Biol Chem       Date:  2014-04-25       Impact factor: 5.157

7.  Integrated magnetic tweezers and single-molecule FRET for investigating the mechanical properties of nucleic acid.

Authors:  Xi Long; Joseph W Parks; Michael D Stone
Journal:  Methods       Date:  2016-06-15       Impact factor: 3.608

8.  Direct observation of DNA distortion by the RSC complex.

Authors:  Giuseppe Lia; Elise Praly; Helder Ferreira; Chris Stockdale; Yuk Ching Tse-Dinh; David Dunlap; Vincent Croquette; David Bensimon; Tom Owen-Hughes
Journal:  Mol Cell       Date:  2006-02-03       Impact factor: 17.970

Review 9.  Rad54, the motor of homologous recombination.

Authors:  Alexander V Mazin; Olga M Mazina; Dmitry V Bugreev; Matthew J Rossi
Journal:  DNA Repair (Amst)       Date:  2010-01-20

Review 10.  Single molecule studies of homologous recombination.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Mol Biosyst       Date:  2008-09-29
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.