Literature DB >> 21754762

(E)-[({[(3-Methyl-phen-yl)meth-yl]sulfan-yl}methane-thio-yl)amino](1-phenyl-pentyl-idene)amine.

Georgiana Paulus, Karen A Crouse, Mohamed Ibrahim Mohamed Tahir, Edward R T Tiekink.   

Abstract

In the structure of the title compound, C(20)H(24)N(2)S(2), the central CN(2)S(2) atoms are planar (r.m.s. deviation = 0.0205 Å) but both benzene rings are twisted out of this plane forming dihedral angles of 23.03 (6) and 84.75 (4)° (tol-yl); the n-butyl group occupies a position normal to the plane [N-C-C-C torsion angle = -84.33 (16)°]. The conformation of the imine bond [1.2888 (18) Å] is E. The syn arrangement of the thione S and amino H atoms enables the formation of N-H⋯S hydrogen bonds between centrosymmetrically related mol-ecules. These lead to eight-membered {⋯HNC=S}(2) synthons which are further stabilized by proximate C-H⋯S interactions. The resulting dimeric aggregates are connected into a supra-molecular chain along the c axis by C-H⋯π(tol-yl) inter-actions.

Entities:  

Year:  2011        PMID: 21754762      PMCID: PMC3120291          DOI: 10.1107/S1600536811016965

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the coordination chemistry of hydrazine­carbodithio­ates, see: Ravoof et al. (2010 ▶). For related structures, see: Khoo et al. (2005 ▶); How et al. (2007 ▶).

Experimental

Crystal data

C20H24N2S2 M = 356.53 Monoclinic, a = 11.3345 (1) Å b = 19.1439 (3) Å c = 8.6779 (1) Å β = 95.802 (1)° V = 1873.34 (4) Å3 Z = 4 Cu Kα radiation μ = 2.58 mm−1 T = 150 K 0.18 × 0.14 × 0.06 mm

Data collection

Oxford Diffraction Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.820, T max = 0.924 33884 measured reflections 3631 independent reflections 3380 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.092 S = 1.03 3631 reflections 222 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811016965/hg5033sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811016965/hg5033Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811016965/hg5033Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H24N2S2F(000) = 760
Mr = 356.53Dx = 1.264 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ybcCell parameters from 23382 reflections
a = 11.3345 (1) Åθ = 3.9–71.2°
b = 19.1439 (3) ŵ = 2.58 mm1
c = 8.6779 (1) ÅT = 150 K
β = 95.802 (1)°Block, pale-yellow
V = 1873.34 (4) Å30.18 × 0.14 × 0.06 mm
Z = 4
Oxford Diffraction Xcaliber Eos Gemini diffractometer3631 independent reflections
Radiation source: fine-focus sealed tube3380 reflections with I > 2σ(I)
graphiteRint = 0.023
Detector resolution: 16.1952 pixels mm-1θmax = 71.4°, θmin = 3.9°
ω/2θ scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −22→23
Tmin = 0.820, Tmax = 0.924l = −10→10
33884 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0606P)2 + 0.5891P] where P = (Fo2 + 2Fc2)/3
3631 reflections(Δ/σ)max = 0.002
222 parametersΔρmax = 0.37 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.02007 (3)0.442478 (17)0.29961 (4)0.02821 (11)
S20.18648 (3)0.521432 (17)0.10978 (4)0.02677 (11)
N10.08701 (10)0.57396 (6)0.33862 (13)0.0265 (3)
H1N0.0476 (14)0.5734 (9)0.4199 (15)0.032*
N20.15725 (10)0.62898 (6)0.29997 (13)0.0257 (2)
C10.09447 (11)0.51415 (7)0.25919 (15)0.0233 (3)
C20.13749 (12)0.69067 (7)0.35107 (15)0.0239 (3)
C30.21717 (12)0.74591 (7)0.29942 (15)0.0245 (3)
C40.19755 (13)0.81656 (8)0.32641 (17)0.0298 (3)
H40.13420.83010.38370.036*
C50.26964 (14)0.86719 (8)0.27053 (19)0.0357 (3)
H50.25480.91520.28880.043*
C60.36287 (14)0.84832 (9)0.18845 (19)0.0368 (3)
H60.41200.88320.15030.044*
C70.38448 (13)0.77831 (9)0.16191 (19)0.0362 (3)
H70.44890.76510.10620.043*
C80.31210 (13)0.72760 (8)0.21670 (17)0.0306 (3)
H80.32720.67970.19780.037*
C90.03642 (12)0.70935 (7)0.44343 (15)0.0253 (3)
H9A0.05780.75110.50750.030*
H9B0.02150.67030.51370.030*
C10−0.07651 (12)0.72428 (7)0.33483 (15)0.0265 (3)
H10A−0.06350.76640.27240.032*
H10B−0.09180.68450.26270.032*
C11−0.18508 (13)0.73576 (8)0.42165 (17)0.0308 (3)
H11A−0.19810.69360.48390.037*
H11B−0.16960.77540.49410.037*
C12−0.29719 (13)0.75075 (9)0.3150 (2)0.0372 (3)
H12A−0.28650.79370.25670.056*
H12B−0.36420.75650.37700.056*
H12C−0.31310.71170.24280.056*
C130.17797 (13)0.43434 (7)0.02445 (18)0.0296 (3)
H13A0.18420.39820.10640.035*
H13B0.10180.4281−0.04070.035*
C140.28092 (12)0.42893 (7)−0.07279 (16)0.0260 (3)
C150.26557 (12)0.44105 (7)−0.23135 (17)0.0269 (3)
H150.18860.4515−0.27970.032*
C160.36119 (13)0.43818 (7)−0.32117 (17)0.0285 (3)
C170.47312 (13)0.42296 (8)−0.24810 (17)0.0310 (3)
H170.53920.4209−0.30720.037*
C180.48925 (13)0.41079 (8)−0.08963 (18)0.0333 (3)
H180.56610.4004−0.04110.040*
C190.39395 (13)0.41375 (8)−0.00206 (17)0.0309 (3)
H190.40550.40540.10630.037*
C200.34264 (15)0.45187 (10)−0.49302 (19)0.0431 (4)
H20A0.32380.5013−0.51120.065*
H20B0.27700.4231−0.53950.065*
H20C0.41510.4401−0.54010.065*
U11U22U33U12U13U23
S10.0308 (2)0.02422 (19)0.03141 (19)−0.00527 (12)0.01214 (14)−0.00176 (13)
S20.03181 (19)0.02038 (18)0.03037 (19)−0.00134 (12)0.01409 (14)−0.00156 (12)
N10.0300 (6)0.0232 (6)0.0281 (6)−0.0013 (4)0.0118 (5)−0.0015 (4)
N20.0273 (6)0.0215 (6)0.0290 (6)−0.0007 (4)0.0066 (4)−0.0008 (4)
C10.0221 (6)0.0231 (6)0.0252 (6)0.0019 (5)0.0049 (5)0.0017 (5)
C20.0262 (6)0.0242 (7)0.0211 (6)0.0035 (5)0.0008 (5)0.0000 (5)
C30.0254 (6)0.0239 (7)0.0233 (6)0.0009 (5)−0.0019 (5)−0.0007 (5)
C40.0299 (7)0.0257 (7)0.0334 (7)0.0020 (5)0.0019 (6)−0.0028 (6)
C50.0381 (8)0.0242 (7)0.0438 (8)−0.0020 (6)−0.0003 (7)−0.0010 (6)
C60.0346 (8)0.0354 (8)0.0400 (8)−0.0110 (6)0.0016 (6)0.0045 (6)
C70.0295 (7)0.0403 (9)0.0399 (8)−0.0018 (6)0.0088 (6)0.0002 (7)
C80.0296 (7)0.0273 (7)0.0353 (7)0.0017 (6)0.0052 (6)−0.0011 (6)
C90.0304 (7)0.0224 (6)0.0237 (6)0.0014 (5)0.0052 (5)−0.0014 (5)
C100.0275 (7)0.0265 (7)0.0260 (6)−0.0003 (5)0.0050 (5)−0.0018 (5)
C110.0312 (7)0.0293 (7)0.0332 (7)0.0011 (6)0.0092 (6)−0.0005 (6)
C120.0287 (7)0.0371 (8)0.0466 (9)0.0038 (6)0.0077 (6)−0.0051 (7)
C130.0322 (7)0.0217 (7)0.0370 (7)−0.0021 (5)0.0137 (6)−0.0064 (6)
C140.0288 (7)0.0184 (6)0.0323 (7)−0.0002 (5)0.0107 (5)−0.0039 (5)
C150.0249 (7)0.0216 (7)0.0346 (7)0.0012 (5)0.0050 (5)0.0001 (5)
C160.0298 (7)0.0259 (7)0.0306 (7)−0.0002 (5)0.0069 (6)0.0012 (5)
C170.0266 (7)0.0327 (7)0.0353 (7)0.0032 (6)0.0116 (6)0.0011 (6)
C180.0256 (7)0.0369 (8)0.0374 (8)0.0052 (6)0.0035 (6)0.0026 (6)
C190.0340 (7)0.0311 (8)0.0282 (7)0.0014 (6)0.0065 (6)0.0000 (6)
C200.0372 (9)0.0600 (11)0.0326 (8)−0.0027 (8)0.0063 (7)0.0077 (7)
S1—C11.6663 (13)C10—H10B0.9900
S2—C11.7497 (13)C11—C121.522 (2)
S2—C131.8229 (14)C11—H11A0.9900
N1—C11.3434 (18)C11—H11B0.9900
N1—N21.3820 (16)C12—H12A0.9800
N1—H1N0.872 (9)C12—H12B0.9800
N2—C21.2888 (18)C12—H12C0.9800
C2—C31.4889 (19)C13—C141.5111 (18)
C2—C91.5061 (18)C13—H13A0.9900
C3—C41.394 (2)C13—H13B0.9900
C3—C81.397 (2)C14—C151.389 (2)
C4—C51.387 (2)C14—C191.394 (2)
C4—H40.9500C15—C161.399 (2)
C5—C61.381 (2)C15—H150.9500
C5—H50.9500C16—C171.391 (2)
C6—C71.386 (2)C16—C201.508 (2)
C6—H60.9500C17—C181.388 (2)
C7—C81.386 (2)C17—H170.9500
C7—H70.9500C18—C191.383 (2)
C8—H80.9500C18—H180.9500
C9—C101.5377 (19)C19—H190.9500
C9—H9A0.9900C20—H20A0.9800
C9—H9B0.9900C20—H20B0.9800
C10—C111.5224 (19)C20—H20C0.9800
C10—H10A0.9900
C1—S2—C13102.54 (6)C12—C11—H11A108.9
C1—N1—N2117.22 (11)C10—C11—H11A108.9
C1—N1—H1N118.0 (12)C12—C11—H11B108.9
N2—N1—H1N124.0 (12)C10—C11—H11B108.9
C2—N2—N1119.37 (11)H11A—C11—H11B107.8
N1—C1—S1122.30 (10)C11—C12—H12A109.5
N1—C1—S2112.67 (10)C11—C12—H12B109.5
S1—C1—S2125.01 (8)H12A—C12—H12B109.5
N2—C2—C3114.55 (12)C11—C12—H12C109.5
N2—C2—C9124.65 (12)H12A—C12—H12C109.5
C3—C2—C9120.57 (11)H12B—C12—H12C109.5
C4—C3—C8118.29 (13)C14—C13—S2106.10 (9)
C4—C3—C2121.77 (12)C14—C13—H13A110.5
C8—C3—C2119.90 (12)S2—C13—H13A110.5
C5—C4—C3120.64 (14)C14—C13—H13B110.5
C5—C4—H4119.7S2—C13—H13B110.5
C3—C4—H4119.7H13A—C13—H13B108.7
C6—C5—C4120.42 (14)C15—C14—C19119.24 (13)
C6—C5—H5119.8C15—C14—C13121.02 (13)
C4—C5—H5119.8C19—C14—C13119.71 (13)
C5—C6—C7119.73 (14)C14—C15—C16121.27 (13)
C5—C6—H6120.1C14—C15—H15119.4
C7—C6—H6120.1C16—C15—H15119.4
C8—C7—C6119.99 (14)C17—C16—C15118.48 (13)
C8—C7—H7120.0C17—C16—C20121.12 (13)
C6—C7—H7120.0C15—C16—C20120.40 (14)
C7—C8—C3120.92 (14)C18—C17—C16120.63 (13)
C7—C8—H8119.5C18—C17—H17119.7
C3—C8—H8119.5C16—C17—H17119.7
C2—C9—C10110.42 (11)C19—C18—C17120.35 (14)
C2—C9—H9A109.6C19—C18—H18119.8
C10—C9—H9A109.6C17—C18—H18119.8
C2—C9—H9B109.6C18—C19—C14120.03 (13)
C10—C9—H9B109.6C18—C19—H19120.0
H9A—C9—H9B108.1C14—C19—H19120.0
C11—C10—C9112.83 (11)C16—C20—H20A109.5
C11—C10—H10A109.0C16—C20—H20B109.5
C9—C10—H10A109.0H20A—C20—H20B109.5
C11—C10—H10B109.0C16—C20—H20C109.5
C9—C10—H10B109.0H20A—C20—H20C109.5
H10A—C10—H10B107.8H20B—C20—H20C109.5
C12—C11—C10113.17 (12)
C1—N1—N2—C2167.00 (12)C2—C3—C8—C7177.31 (13)
N2—N1—C1—S1176.84 (10)N2—C2—C9—C10−84.33 (16)
N2—N1—C1—S2−4.54 (15)C3—C2—C9—C1089.91 (14)
C13—S2—C1—N1−179.56 (10)C2—C9—C10—C11173.76 (11)
C13—S2—C1—S1−0.98 (11)C9—C10—C11—C12179.86 (12)
N1—N2—C2—C3−178.88 (11)C1—S2—C13—C14−163.64 (10)
N1—N2—C2—C9−4.3 (2)S2—C13—C14—C15−97.18 (14)
N2—C2—C3—C4171.08 (12)S2—C13—C14—C1980.75 (14)
C9—C2—C3—C4−3.72 (19)C19—C14—C15—C160.1 (2)
N2—C2—C3—C8−6.59 (18)C13—C14—C15—C16178.05 (12)
C9—C2—C3—C8178.62 (12)C14—C15—C16—C17−0.1 (2)
C8—C3—C4—C50.9 (2)C14—C15—C16—C20−179.68 (14)
C2—C3—C4—C5−176.83 (13)C15—C16—C17—C180.1 (2)
C3—C4—C5—C6−0.6 (2)C20—C16—C17—C18179.67 (15)
C4—C5—C6—C70.0 (2)C16—C17—C18—C19−0.1 (2)
C5—C6—C7—C80.5 (2)C17—C18—C19—C140.1 (2)
C6—C7—C8—C3−0.2 (2)C15—C14—C19—C18−0.1 (2)
C4—C3—C8—C7−0.4 (2)C13—C14—C19—C18−178.05 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1N···S1i0.87 (1)2.64 (1)3.4926 (12)165.(1)
C9—H9B···S1i0.992.773.7576 (14)178
C12—H12C···Cg1ii0.982.813.7162 (14)155
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C14–C19 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯S1i0.87 (1)2.64 (1)3.4926 (12)165 (1)
C9—H9B⋯S1i0.992.773.7576 (14)178
C12—H12CCg1ii0.982.813.7162 (14)155

Symmetry codes: (i) ; (ii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  4 in total

1.  {S-Benzyl 3-[(6-methyl-pyridin-2-yl)-methyl-idene]dithio-carbazato}nickel(II) monohydrate.

Authors:  Siti Aminah Omar; Thahira B S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

2.  Benzyl 3-(2-methyl-phen-yl)dithio-carbazate.

Authors:  Shahedeh Tayamon; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-18

3.  2-Cyclo-hexyl-idene-N-methyl-hydrazine-carbothio-amide.

Authors:  Shahedeh Tayamon; Nurul Ain Mazlan; Thahira Begum S A Ravoof; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13

4.  Bis{S-benzyl 3-[(phen-yl)(pyridin-2-yl)methyl-idene]dithio-carbazato}zinc acetonitrile monosolvate.

Authors:  Thahira B S A Ravoof; Siti Aminah Omar; Mohamed Ibrahim Mohamed Tahir; Karen A Crouse
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
  4 in total

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