Literature DB >> 22590290

Benzyl 3-(2-methyl-phen-yl)dithio-carbazate.

Shahedeh Tayamon, Thahira Begum S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse, Edward R T Tiekink.   

Abstract

In the title compound, C(15)H(16)N(2)S(2), the central C(2)n class="Chemical">N(2)S(2) unit is essentially planar (r.m.s. deviation = 0.047 Å) and forms dihedral angles of 68.26 (4) and 65.99 (4)° with the phenyl and benzene rings, respectively, indicating a twisted mol-ecule. Supra-molecular chains with a step topology and propagating along [100] feature in the crystal packing, mediated through N-H⋯S hydrogen bonds. The chains are consolidated into a three-dimensional architecture by C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22590290      PMCID: PMC3344528          DOI: 10.1107/S160053681201567X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the coordination chemistry and bio-activity of hydrazinecarbodithio­ates, see: Khoo et al. (2005 ▶); Chan et al. (2008 ▶); Ravoof et al. (2010 ▶). For related structures, see: Paulus et al. (2011 ▶); Manan et al. (2012 ▶). For the synthesis, see: Tarafder et al. (2002 ▶).

Experimental

Crystal data

C15H16N2S2 M = 288.42 Monoclinic, a = 5.7000 (1) Å b = 11.0136 (2) Å c = 22.7545 (4) Å β = 95.198 (2)° V = 1422.60 (4) Å3 Z = 4 Cu Kα radiation μ = 3.27 mm−1 T = 100 K 0.22 × 0.14 × 0.08 mm

Data collection

Oxford Diffraction Xcaliber Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.63, T max = 0.77 15011 measured reflections 2725 independent reflections 2560 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.097 S = 1.03 2725 reflections 179 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681201567X/hg5209sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681201567X/hg5209Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681201567X/hg5209Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H16N2S2F(000) = 608
Mr = 288.42Dx = 1.347 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54180 Å
Hall symbol: -P 2ynCell parameters from 8863 reflections
a = 5.7000 (1) Åθ = 4–71°
b = 11.0136 (2) ŵ = 3.27 mm1
c = 22.7545 (4) ÅT = 100 K
β = 95.198 (2)°Prism, dark-yellow
V = 1422.60 (4) Å30.22 × 0.14 × 0.08 mm
Z = 4
Oxford Diffraction Xcaliber Eos Gemini diffractometer2725 independent reflections
Radiation source: fine-focus sealed tube2560 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
Detector resolution: 16.1952 pixels mm-1θmax = 71.5°, θmin = 3.9°
ω/2θ scansh = −6→6
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→13
Tmin = 0.63, Tmax = 0.77l = −27→25
15011 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0646P)2 + 0.6201P] where P = (Fo2 + 2Fc2)/3
2725 reflections(Δ/σ)max = 0.001
179 parametersΔρmax = 0.44 e Å3
2 restraintsΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.96691 (6)0.83305 (3)0.582743 (16)0.02154 (13)
S20.73047 (7)0.64766 (4)0.498745 (16)0.02497 (14)
N11.1403 (2)0.62113 (12)0.56054 (6)0.0234 (3)
H1n1.153 (3)0.5503 (11)0.5436 (8)0.028*
N21.3086 (2)0.65256 (12)0.60680 (6)0.0226 (3)
H2n1.446 (2)0.6572 (17)0.5924 (8)0.027*
C10.6928 (3)0.90389 (14)0.55250 (7)0.0247 (3)
H1A0.69440.91530.50940.030*
H1B0.55710.85160.55970.030*
C20.6713 (3)1.02493 (14)0.58237 (6)0.0216 (3)
C30.8217 (3)1.12038 (16)0.57225 (7)0.0277 (4)
H30.94441.10860.54720.033*
C40.7947 (3)1.23226 (16)0.59816 (8)0.0314 (4)
H40.89891.29670.59080.038*
C50.6166 (3)1.25144 (15)0.63490 (7)0.0285 (4)
H50.59781.32880.65240.034*
C60.4669 (3)1.15700 (15)0.64578 (8)0.0279 (4)
H60.34451.16930.67090.033*
C70.4950 (3)1.04384 (15)0.62004 (7)0.0252 (3)
H70.39310.97890.62820.030*
C80.9545 (3)0.69201 (14)0.54650 (6)0.0206 (3)
C91.3110 (3)0.57463 (14)0.65724 (7)0.0211 (3)
C101.4934 (3)0.59097 (14)0.70252 (7)0.0231 (3)
C111.4978 (3)0.51509 (15)0.75165 (7)0.0272 (3)
H111.62050.52430.78250.033*
C121.3278 (3)0.42639 (16)0.75675 (7)0.0294 (4)
H121.33610.37450.79020.035*
C131.1459 (3)0.41438 (16)0.71253 (7)0.0288 (4)
H131.02670.35530.71610.035*
C141.1371 (3)0.48843 (15)0.66296 (7)0.0250 (3)
H141.01140.48000.63280.030*
C151.6766 (3)0.68749 (16)0.69763 (7)0.0288 (4)
H15A1.77730.69250.73480.043*
H15B1.59910.76590.68940.043*
H15C1.77300.66700.66550.043*
U11U22U33U12U13U23
S10.0220 (2)0.0224 (2)0.0195 (2)0.00052 (13)−0.00217 (14)−0.00249 (13)
S20.0232 (2)0.0274 (2)0.0232 (2)−0.00015 (14)−0.00370 (15)−0.00584 (14)
N10.0266 (7)0.0216 (6)0.0210 (6)0.0004 (5)−0.0032 (5)−0.0029 (5)
N20.0217 (7)0.0245 (7)0.0207 (7)−0.0005 (5)−0.0028 (5)0.0004 (5)
C10.0217 (8)0.0261 (8)0.0253 (8)0.0019 (6)−0.0035 (6)−0.0019 (6)
C20.0209 (7)0.0242 (8)0.0188 (7)0.0017 (6)−0.0030 (5)0.0008 (6)
C30.0288 (8)0.0312 (8)0.0241 (8)−0.0025 (7)0.0065 (6)−0.0002 (6)
C40.0372 (10)0.0252 (8)0.0323 (9)−0.0060 (7)0.0055 (7)0.0007 (7)
C50.0320 (9)0.0256 (8)0.0268 (8)0.0048 (6)−0.0037 (6)−0.0036 (6)
C60.0214 (8)0.0359 (9)0.0263 (8)0.0047 (6)0.0019 (6)−0.0026 (7)
C70.0207 (7)0.0287 (8)0.0260 (8)−0.0021 (6)0.0003 (6)0.0016 (6)
C80.0230 (7)0.0233 (7)0.0157 (7)−0.0025 (6)0.0026 (5)0.0008 (6)
C90.0217 (7)0.0214 (7)0.0203 (7)0.0037 (6)0.0030 (6)−0.0018 (6)
C100.0218 (8)0.0269 (8)0.0208 (7)0.0033 (6)0.0024 (6)−0.0049 (6)
C110.0255 (8)0.0366 (9)0.0192 (7)0.0045 (7)0.0000 (6)−0.0025 (6)
C120.0343 (9)0.0339 (9)0.0205 (8)0.0048 (7)0.0062 (6)0.0034 (6)
C130.0283 (8)0.0298 (8)0.0289 (8)−0.0017 (7)0.0067 (6)0.0010 (7)
C140.0234 (8)0.0263 (8)0.0247 (8)0.0004 (6)−0.0004 (6)−0.0019 (6)
C150.0249 (8)0.0355 (9)0.0254 (8)−0.0024 (7)−0.0016 (6)−0.0024 (7)
S1—C81.7571 (15)C5—H50.9500
S1—C11.8247 (16)C6—C71.392 (2)
S2—C81.6729 (15)C6—H60.9500
N1—C81.331 (2)C7—H70.9500
N1—N21.4020 (17)C9—C141.387 (2)
N1—H1n0.877 (9)C9—C101.407 (2)
N2—C91.432 (2)C10—C111.394 (2)
N2—H2n0.878 (9)C10—C151.501 (2)
C1—C21.506 (2)C11—C121.388 (2)
C1—H1A0.9900C11—H110.9500
C1—H1B0.9900C12—C131.384 (2)
C2—C31.389 (2)C12—H120.9500
C2—C71.394 (2)C13—C141.389 (2)
C3—C41.381 (2)C13—H130.9500
C3—H30.9500C14—H140.9500
C4—C51.389 (3)C15—H15A0.9800
C4—H40.9500C15—H15B0.9800
C5—C61.382 (2)C15—H15C0.9800
C8—S1—C1101.79 (7)C2—C7—H7119.7
C8—N1—N2120.74 (13)C6—C7—H7119.7
C8—N1—H1n120.8 (13)N1—C8—S2121.91 (12)
N2—N1—H1n118.2 (13)N1—C8—S1114.11 (11)
N1—N2—C9114.19 (12)S2—C8—S1123.98 (9)
N1—N2—H2n108.0 (13)C14—C9—C10120.37 (14)
C9—N2—H2n112.9 (13)C14—C9—N2122.02 (14)
C2—C1—S1108.06 (10)C10—C9—N2117.57 (14)
C2—C1—H1A110.1C11—C10—C9117.97 (15)
S1—C1—H1A110.1C11—C10—C15121.44 (14)
C2—C1—H1B110.1C9—C10—C15120.59 (14)
S1—C1—H1B110.1C12—C11—C10121.78 (15)
H1A—C1—H1B108.4C12—C11—H11119.1
C3—C2—C7118.62 (15)C10—C11—H11119.1
C3—C2—C1121.22 (14)C13—C12—C11119.28 (15)
C7—C2—C1120.15 (14)C13—C12—H12120.4
C4—C3—C2120.69 (15)C11—C12—H12120.4
C4—C3—H3119.7C12—C13—C14120.25 (16)
C2—C3—H3119.7C12—C13—H13119.9
C3—C4—C5120.58 (16)C14—C13—H13119.9
C3—C4—H4119.7C9—C14—C13120.29 (15)
C5—C4—H4119.7C9—C14—H14119.9
C6—C5—C4119.37 (15)C13—C14—H14119.9
C6—C5—H5120.3C10—C15—H15A109.5
C4—C5—H5120.3C10—C15—H15B109.5
C5—C6—C7120.12 (16)H15A—C15—H15B109.5
C5—C6—H6119.9C10—C15—H15C109.5
C7—C6—H6119.9H15A—C15—H15C109.5
C2—C7—C6120.61 (15)H15B—C15—H15C109.5
C8—N1—N2—C9111.24 (16)C1—S1—C8—S2−1.24 (12)
C8—S1—C1—C2176.89 (11)N1—N2—C9—C14−9.7 (2)
S1—C1—C2—C368.74 (16)N1—N2—C9—C10172.43 (13)
S1—C1—C2—C7−112.65 (14)C14—C9—C10—C112.4 (2)
C7—C2—C3—C4−1.1 (2)N2—C9—C10—C11−179.66 (14)
C1—C2—C3—C4177.55 (15)C14—C9—C10—C15−177.54 (14)
C2—C3—C4—C50.0 (3)N2—C9—C10—C150.4 (2)
C3—C4—C5—C60.5 (3)C9—C10—C11—C12−0.6 (2)
C4—C5—C6—C70.0 (2)C15—C10—C11—C12179.38 (15)
C3—C2—C7—C61.6 (2)C10—C11—C12—C13−1.4 (2)
C1—C2—C7—C6−177.07 (14)C11—C12—C13—C141.5 (2)
C5—C6—C7—C2−1.0 (2)C10—C9—C14—C13−2.3 (2)
N2—N1—C8—S2−170.63 (11)N2—C9—C14—C13179.88 (14)
N2—N1—C8—S18.92 (19)C12—C13—C14—C90.3 (2)
C1—S1—C8—N1179.22 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1n···S2i0.88 (1)2.50 (1)3.3625 (14)169 (2)
N2—H2n···S2ii0.88 (1)2.79 (2)3.5919 (13)152 (1)
C11—H11···Cg1iii0.952.983.8594 (18)155
C5—H5···Cg2iv0.952.843.7005 (18)151
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C2–C7 and C9–C14 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯S2i0.88 (1)2.50 (1)3.3625 (14)169 (2)
N2—H2n⋯S2ii0.88 (1)2.79 (2)3.5919 (13)152 (1)
C11—H11⋯Cg1iii0.952.983.8594 (18)155
C5—H5⋯Cg2iv0.952.843.7005 (18)151

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-[({[(3-Methyl-phen-yl)meth-yl]sulfan-yl}methane-thio-yl)amino](1-phenyl-pentyl-idene)amine.

Authors:  Georgiana Paulus; Karen A Crouse; Mohamed Ibrahim Mohamed Tahir; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-11
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1.  Crystal structure of benzyl 3-(3-methyl-phen-yl)di-thio-carbazate.

Authors:  NurFadhilah Abdul Aziz; Enis Nadia Md Yusof; Thahira Begum S A Ravoof; Edward R T Tiekink
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