Literature DB >> 22412456

{S-Benzyl 3-[(6-methyl-pyridin-2-yl)-methyl-idene]dithio-carbazato}nickel(II) monohydrate.

Siti Aminah Omar1, Thahira B S A Ravoof, Mohamed Ibrahim Mohamed Tahir, Karen A Crouse.   

Abstract

The structure of the title compound, [Ni(C(15)H(14)N(3)S(2))(2)]·H(2)O, has one mol-ecule in the asymmetric unit, along with a solvent water mol-ecule. The two different Schiff base moieties coordinate to the central Ni(II) ion as tridentate N,N',S-chelating ligands, creating a six-coordinate distorted octa-hedral environment [the smallest angle being 77.43 (7)° and the widest angle being 169.99 (7)°]. The mean planes of the two ligands are nearly orthogonal to each other with an angle of 89.53 (6)°. The packing of the complex is supported by O-H⋯N and O-H⋯S hydrogen bonding between the solvent water mol-ecule and the uncoordinated N and S atoms of neighbouring ligands.

Entities:  

Year:  2012        PMID: 22412456      PMCID: PMC3297266          DOI: 10.1107/S1600536812006952

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on the coordination chemistry of hydrazine carbodithio­ates, see: Ravoof et al. (2010 ▶). For the synthesis, see: Ali et al. (1997 ▶). For related structures, see: Khoo et al. (2005 ▶); Paulus et al. (2011 ▶).

Experimental

Crystal data

[Ni(C15H14N3S2)2]·H2O M = 677.58 Monoclinic, a = 16.2165 (5) Å b = 13.2474 (3) Å c = 15.5935 (3) Å β = 111.404 (3)° V = 3118.86 (14) Å3 Z = 4 Mo Kα radiation μ = 0.93 mm−1 T = 150 K 0.37 × 0.12 × 0.06 mm

Data collection

Oxford Diffraction Gemini CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2002 ▶) T min = 0.89, T max = 0.95 20706 measured reflections 7223 independent reflections 6011 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.087 S = 0.97 7199 reflections 379 parameters H-atom parameters constrained Δρmax = 0.53 e Å−3 Δρmin = −0.74 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2002 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2002 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812006952/wm2591sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812006952/wm2591Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C15H14N3S2)2]·H2OF(000) = 1408
Mr = 677.58Dx = 1.443 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6534 reflections
a = 16.2165 (5) Åθ = 2–29°
b = 13.2474 (3) ŵ = 0.93 mm1
c = 15.5935 (3) ÅT = 150 K
β = 111.404 (3)°Plate, black
V = 3118.86 (14) Å30.37 × 0.12 × 0.06 mm
Z = 4
Oxford Diffraction Gemini CCD diffractometer7223 independent reflections
Radiation source: sealed x-ray tube6011 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
combined φ and ω scansθmax = 29.0°, θmin = 2.2°
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2002)h = −21→21
Tmin = 0.89, Tmax = 0.95k = −16→17
20706 measured reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.036H-atom parameters constrained
wR(F2) = 0.087 Method = Modified Sheldrick w = 1/[σ2(F2) + (0.04P)2 + 2.87P], where P = (max(Fo2,0) + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
7199 reflectionsΔρmax = 0.53 e Å3
379 parametersΔρmin = −0.74 e Å3
0 restraints
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems open-flow nitrogen cryostat (Cosier & Glazer, 1986) with a nominal stability of 0.1 K.Cosier, J. & Glazer, A.M., 1986. J. Appl. Cryst. 105 107.
Refinement. The number of reflections in the refinement section is 7199 because we used [sin θ/λ]2 at least 0.01 to eliminate poor reflections that may be poorly measured in the vicinity of the beam stop. If we removed this condition we will get the 7233 reflections as per data collection with an R factor of 3.66% and weighted R factor of 8.18%.
xyzUiso*/Ueq
C1010.78816 (15)0.24923 (17)0.47882 (15)0.0283
N1020.75659 (12)0.22384 (13)0.54036 (11)0.0238
N1030.71678 (12)0.29966 (14)0.57292 (12)0.0272
C1040.69132 (14)0.26683 (16)0.63824 (13)0.0226
S1050.64057 (4)0.35514 (4)0.68689 (4)0.0282
S1060.70004 (4)0.14821 (4)0.68466 (3)0.0238
C1070.65542 (19)0.47171 (17)0.63233 (17)0.0377
C1080.53242 (17)0.58004 (19)0.64409 (19)0.0395
C1090.50227 (18)0.6579 (2)0.6853 (2)0.0446
C1100.56150 (19)0.71305 (19)0.75561 (18)0.0409
C1110.65034 (19)0.69239 (19)0.78473 (17)0.0406
C1120.68026 (17)0.61438 (19)0.74452 (16)0.0355
C1130.62176 (16)0.55768 (17)0.67379 (15)0.0298
C1140.83009 (14)0.17023 (17)0.44438 (14)0.0259
N1150.83334 (11)0.07754 (14)0.48268 (11)0.0240
C1160.86856 (14)0.00076 (18)0.45121 (14)0.0273
C1170.90229 (16)0.0166 (2)0.38157 (16)0.0353
C1180.89933 (16)0.1106 (2)0.34373 (16)0.0373
C1190.86213 (15)0.1900 (2)0.37501 (15)0.0319
C1200.86909 (17)−0.10138 (18)0.49139 (17)0.0350
C2010.75877 (14)−0.11392 (16)0.65377 (14)0.0245
N2020.81710 (11)−0.04416 (14)0.66865 (11)0.0227
N2030.89420 (12)−0.05579 (14)0.74432 (12)0.0262
C2040.94462 (14)0.02487 (17)0.76176 (14)0.0248
S2050.92301 (4)0.13799 (4)0.70535 (4)0.0270
S2061.04398 (4)0.00134 (5)0.85547 (4)0.0333
C2071.08635 (16)0.12604 (19)0.89890 (16)0.0355
C2081.17032 (15)0.10646 (17)0.98114 (14)0.0280
C2091.16698 (17)0.05990 (19)1.05927 (16)0.0348
C2101.24391 (18)0.0352 (2)1.13128 (15)0.0391
C2111.32515 (17)0.05774 (19)1.12651 (16)0.0387
C2121.32915 (16)0.10684 (19)1.04979 (17)0.0364
C2131.25177 (15)0.13052 (18)0.97718 (15)0.0302
C2140.67716 (14)−0.10128 (16)0.57445 (14)0.0236
N2150.67192 (11)−0.01687 (13)0.52345 (11)0.0219
C2160.59903 (14)−0.00295 (17)0.44840 (13)0.0250
C2170.52933 (15)−0.07246 (18)0.42331 (15)0.0301
C2180.53438 (15)−0.15647 (18)0.47575 (16)0.0313
C2190.60967 (15)−0.17207 (17)0.55357 (15)0.0283
C2200.59440 (16)0.0891 (2)0.39242 (16)0.0360
Ni10.782107 (17)0.08387 (2)0.593737 (17)0.0203
O3011.09855 (15)0.24209 (18)0.67870 (18)0.0708
H10110.78470.31650.45690.0339*
H10720.71790.48100.64380.0478*
H10710.62290.46720.56730.0477*
H10810.49170.54310.59550.0485*
H10910.44160.67190.66450.0539*
H11010.54150.76610.78400.0505*
H11110.69120.73250.83290.0497*
H11210.74240.60050.76630.0448*
H11710.9264−0.03890.36170.0437*
H11810.92240.12050.29660.0455*
H11910.85820.25590.35060.0391*
H12030.8930−0.14930.46020.0539*
H12020.9043−0.10120.55600.0535*
H12010.8098−0.12200.48290.0538*
H20110.7692−0.17140.69360.0297*
H20711.09820.16530.84930.0443*
H20721.04170.16110.91780.0448*
H20911.11110.04471.06360.0436*
H21011.24070.00271.18330.0494*
H21111.37820.04151.17590.0471*
H21211.38440.12561.04700.0452*
H21311.25400.16240.92320.0378*
H21710.4787−0.06070.36910.0360*
H21810.4875−0.20230.45960.0384*
H21910.6159−0.22840.59250.0346*
H22010.53980.09050.34000.0560*
H22030.64410.09170.37260.0562*
H22020.59770.14760.42990.0563*
H30111.04770.21450.68050.1043*
H30121.10230.30910.69140.1042*
U11U22U33U12U13U23
C1010.0341 (12)0.0252 (12)0.0303 (11)0.0032 (9)0.0172 (9)0.0072 (9)
N1020.0270 (9)0.0223 (9)0.0239 (8)0.0026 (7)0.0113 (7)0.0026 (7)
N1030.0339 (10)0.0215 (9)0.0303 (9)0.0042 (8)0.0166 (8)0.0015 (8)
C1040.0235 (10)0.0200 (10)0.0236 (9)0.0019 (8)0.0078 (8)−0.0018 (8)
S1050.0394 (3)0.0207 (3)0.0304 (3)0.0028 (2)0.0197 (2)−0.0005 (2)
S1060.0285 (3)0.0208 (3)0.0249 (2)0.0010 (2)0.0132 (2)0.0021 (2)
C1070.0610 (17)0.0215 (12)0.0393 (13)0.0018 (11)0.0288 (12)−0.0005 (10)
C1080.0404 (14)0.0302 (13)0.0460 (14)−0.0066 (11)0.0136 (12)0.0011 (11)
C1090.0392 (15)0.0336 (14)0.0690 (18)0.0103 (12)0.0293 (14)0.0146 (13)
C1100.0639 (18)0.0247 (13)0.0444 (14)0.0112 (12)0.0321 (13)0.0054 (11)
C1110.0584 (17)0.0292 (13)0.0305 (12)0.0087 (12)0.0118 (12)0.0007 (10)
C1120.0400 (14)0.0302 (13)0.0339 (12)0.0088 (11)0.0108 (10)0.0032 (10)
C1130.0424 (14)0.0195 (11)0.0324 (11)0.0063 (10)0.0197 (10)0.0059 (9)
C1140.0241 (11)0.0302 (12)0.0239 (10)0.0007 (9)0.0092 (8)0.0023 (9)
N1150.0214 (9)0.0290 (10)0.0219 (8)0.0015 (7)0.0082 (7)−0.0018 (7)
C1160.0225 (11)0.0325 (12)0.0259 (10)−0.0005 (9)0.0075 (8)−0.0042 (9)
C1170.0338 (13)0.0418 (14)0.0364 (12)0.0005 (11)0.0200 (10)−0.0087 (11)
C1180.0348 (13)0.0524 (16)0.0320 (11)−0.0011 (12)0.0209 (10)−0.0001 (11)
C1190.0296 (12)0.0406 (14)0.0294 (11)0.0029 (10)0.0153 (9)0.0083 (10)
C1200.0416 (14)0.0307 (13)0.0392 (12)0.0050 (11)0.0224 (11)−0.0038 (10)
C2010.0290 (11)0.0194 (10)0.0249 (10)−0.0003 (9)0.0094 (9)0.0011 (8)
N2020.0222 (9)0.0242 (9)0.0211 (8)0.0014 (7)0.0070 (7)−0.0004 (7)
N2030.0241 (9)0.0275 (10)0.0227 (8)0.0016 (8)0.0037 (7)0.0023 (7)
C2040.0235 (11)0.0281 (12)0.0220 (9)0.0026 (9)0.0075 (8)−0.0006 (9)
S2050.0252 (3)0.0250 (3)0.0281 (3)−0.0023 (2)0.0067 (2)0.0013 (2)
S2060.0284 (3)0.0307 (3)0.0311 (3)0.0018 (2)−0.0007 (2)−0.0003 (2)
C2070.0326 (13)0.0326 (13)0.0344 (12)−0.0023 (10)0.0040 (10)0.0010 (10)
C2080.0299 (12)0.0261 (12)0.0254 (10)−0.0003 (9)0.0071 (9)−0.0037 (9)
C2090.0369 (13)0.0387 (14)0.0304 (11)−0.0020 (11)0.0143 (10)−0.0012 (10)
C2100.0555 (16)0.0380 (14)0.0221 (10)0.0054 (12)0.0121 (11)0.0016 (10)
C2110.0409 (14)0.0349 (14)0.0288 (11)0.0107 (11)−0.0010 (10)−0.0073 (10)
C2120.0296 (13)0.0344 (14)0.0427 (13)−0.0014 (10)0.0101 (10)−0.0125 (11)
C2130.0335 (12)0.0288 (12)0.0275 (10)−0.0028 (10)0.0102 (9)−0.0037 (9)
C2140.0265 (11)0.0218 (11)0.0238 (9)0.0007 (9)0.0109 (8)−0.0019 (8)
N2150.0233 (9)0.0230 (9)0.0208 (8)0.0007 (7)0.0098 (7)−0.0018 (7)
C2160.0233 (11)0.0321 (12)0.0210 (9)0.0033 (9)0.0096 (8)−0.0020 (9)
C2170.0235 (11)0.0385 (13)0.0251 (10)0.0017 (10)0.0052 (9)−0.0061 (10)
C2180.0246 (11)0.0323 (13)0.0362 (12)−0.0043 (10)0.0103 (9)−0.0115 (10)
C2190.0306 (12)0.0227 (11)0.0327 (11)−0.0018 (9)0.0127 (9)−0.0026 (9)
C2200.0284 (12)0.0481 (15)0.0274 (11)0.0009 (11)0.0053 (9)0.0108 (11)
Ni10.02185 (14)0.01956 (14)0.02001 (12)0.00104 (11)0.00830 (10)0.00119 (10)
O3010.0684 (15)0.0540 (14)0.1051 (19)−0.0185 (12)0.0496 (14)−0.0284 (13)
C101—N1021.286 (3)C201—C2141.454 (3)
C101—C1141.453 (3)C201—Ni12.854 (2)
C101—Ni12.854 (2)C201—H20110.958
C101—H10110.949N202—N2031.379 (2)
N102—N1031.386 (2)N202—Ni12.0197 (18)
N102—Ni12.0127 (18)N203—C2041.312 (3)
N103—C1041.305 (3)C204—S2051.708 (2)
C104—S1051.754 (2)C204—S2061.764 (2)
C104—S1061.714 (2)S205—Ni12.4211 (6)
S105—C1071.821 (2)S206—C2071.822 (3)
S106—Ni12.4259 (5)C207—C2081.514 (3)
C107—C1131.507 (3)C207—H20711.006
C107—H10720.970C207—H20720.992
C107—H10710.958C208—C2091.384 (3)
C108—C1091.395 (4)C208—C2131.382 (3)
C108—C1131.383 (3)C209—C2101.379 (3)
C108—H10810.941C209—H20910.954
C109—C1101.375 (4)C210—C2111.379 (4)
C109—H10910.935C210—H21010.936
C110—C1111.371 (4)C211—C2121.384 (4)
C110—H11010.949C211—H21110.947
C111—C1121.385 (3)C212—C2131.385 (3)
C111—H11110.960C212—H21210.946
C112—C1131.384 (3)C213—H21310.954
C112—H11210.956C214—N2151.357 (3)
C114—N1151.358 (3)C214—C2191.387 (3)
C114—C1191.385 (3)N215—C2161.338 (3)
N115—C1161.344 (3)N215—Ni12.1784 (17)
N115—Ni12.1787 (16)C216—C2171.399 (3)
C116—C1171.399 (3)C216—C2201.485 (3)
C116—C1201.490 (3)C217—C2181.366 (3)
C117—C1181.371 (4)C217—H21710.952
C117—H11710.937C218—C2191.387 (3)
C118—C1191.386 (3)C218—H21810.933
C118—H11810.947C219—H21910.944
C119—H11910.946C220—H22010.961
C120—H12030.964C220—H22030.963
C120—H12020.959C220—H22020.961
C120—H12010.962O301—H30110.913
C201—N2021.281 (3)O301—H30120.907
N102—C101—C114117.0 (2)S206—C207—H2071109.6
C114—C101—Ni178.89 (12)C208—C207—H2071112.0
N102—C101—H1011121.8S206—C207—H2072108.5
C114—C101—H1011121.1C208—C207—H2072110.9
Ni1—C101—H1011159.4H2071—C207—H2072110.5
C101—N102—N103116.68 (18)C207—C208—C209120.7 (2)
C101—N102—Ni1118.13 (15)C207—C208—C213120.1 (2)
N103—N102—Ni1124.68 (13)C209—C208—C213119.2 (2)
N102—N103—C104111.49 (17)C208—C209—C210120.5 (2)
N103—C104—S105116.56 (16)C208—C209—H2091120.0
N103—C104—S106129.35 (16)C210—C209—H2091119.5
S105—C104—S106114.09 (11)C209—C210—C211120.2 (2)
C104—S105—C107101.58 (10)C209—C210—H2101119.6
C104—S106—Ni193.07 (7)C211—C210—H2101120.2
S105—C107—C113108.07 (15)C210—C211—C212119.7 (2)
S105—C107—H1072109.2C210—C211—H2111120.6
C113—C107—H1072110.0C212—C211—H2111119.7
S105—C107—H1071109.0C211—C212—C213119.9 (2)
C113—C107—H1071110.8C211—C212—H2121120.4
H1072—C107—H1071109.7C213—C212—H2121119.6
C109—C108—C113120.3 (2)C212—C213—C208120.5 (2)
C109—C108—H1081119.7C212—C213—H2131120.5
C113—C108—H1081120.0C208—C213—H2131119.1
C108—C109—C110120.0 (3)C201—C214—N215115.87 (18)
C108—C109—H1091119.2C201—C214—C219121.1 (2)
C110—C109—H1091120.8N215—C214—C219122.99 (19)
C109—C110—C111120.1 (2)C214—N215—C216118.19 (18)
C109—C110—H1101120.5C214—N215—Ni1110.22 (13)
C111—C110—H1101119.4C216—N215—Ni1131.00 (15)
C110—C111—C112119.9 (2)N215—C216—C217121.3 (2)
C110—C111—H1111119.4N215—C216—C220117.78 (19)
C112—C111—H1111120.7C217—C216—C220120.91 (19)
C111—C112—C113120.9 (2)C216—C217—C218120.2 (2)
C111—C112—H1121118.7C216—C217—H2171119.2
C113—C112—H1121120.3C218—C217—H2171120.6
C107—C113—C112120.1 (2)C217—C218—C219119.1 (2)
C107—C113—C108121.2 (2)C217—C218—H2181120.2
C112—C113—C108118.7 (2)C219—C218—H2181120.6
C101—C114—N115115.90 (18)C218—C219—C214118.2 (2)
C101—C114—C119120.8 (2)C218—C219—H2191122.2
N115—C114—C119123.3 (2)C214—C219—H2191119.6
C114—N115—C116118.50 (18)C216—C220—H2201110.4
C114—N115—Ni1110.48 (13)C216—C220—H2203110.4
C116—N115—Ni1130.96 (15)H2201—C220—H2203110.2
N115—C116—C117120.6 (2)C216—C220—H2202108.9
N115—C116—C120118.15 (19)H2201—C220—H2202109.3
C117—C116—C120121.3 (2)H2203—C220—H2202107.4
C116—C117—C118120.5 (2)N115—Ni1—N21593.28 (6)
C116—C117—H1171117.9N115—Ni1—S106158.09 (5)
C118—C117—H1171121.6N215—Ni1—S10689.15 (4)
C117—C118—C119119.3 (2)N115—Ni1—S20592.82 (5)
C117—C118—H1181119.8N215—Ni1—S205158.24 (5)
C119—C118—H1181121.0S106—Ni1—S20592.92 (2)
C118—C119—C114117.9 (2)N115—Ni1—N202108.62 (7)
C118—C119—H1191122.3N215—Ni1—N20277.43 (7)
C114—C119—H1191119.9S106—Ni1—N20293.17 (5)
C116—C120—H1203109.1S205—Ni1—N20280.83 (5)
C116—C120—H1202110.4N115—Ni1—N10277.72 (7)
H1203—C120—H1202109.7N215—Ni1—N102110.44 (7)
C116—C120—H1201110.4S106—Ni1—N10281.03 (5)
H1203—C120—H1201108.1S205—Ni1—N10291.27 (5)
H1202—C120—H1201109.1N202—Ni1—N102169.99 (7)
N202—C201—C214116.97 (19)N115—Ni1—C201111.11 (6)
C214—C201—Ni178.68 (12)N215—Ni1—C20154.55 (6)
N202—C201—H2011120.8S106—Ni1—C20187.95 (4)
C214—C201—H2011122.2S205—Ni1—C201103.85 (5)
Ni1—C201—H2011158.4N202—Ni1—C20123.38 (6)
C201—N202—N203116.94 (18)N115—Ni1—C10154.55 (6)
C201—N202—Ni1117.90 (14)N215—Ni1—C101111.35 (6)
N203—N202—Ni1124.35 (14)S106—Ni1—C101104.43 (5)
N202—N203—C204112.84 (17)S205—Ni1—C10189.11 (5)
N203—C204—S205127.77 (16)N202—Ni1—C101160.18 (6)
N203—C204—S206109.85 (16)N102—Ni1—C201161.75 (7)
S205—C204—S206122.38 (13)N102—Ni1—C10123.42 (6)
C204—S205—Ni194.18 (7)C201—Ni1—C101161.74 (6)
C204—S206—C207104.73 (11)H3011—O301—H3012112.0
S206—C207—C208105.08 (16)
D—H···AD—HH···AD···AD—H···A
O301—H3011···S2050.912.423.323 (3)173
O301—H3012···N203i0.912.042.919 (4)162
Table 1

Selected bond lengths (Å)

N102—Ni12.0127 (18)
S106—Ni12.4259 (5)
N115—Ni12.1787 (16)
N202—Ni12.0197 (18)
S205—Ni12.4211 (6)
N215—Ni12.1784 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O301—H3011⋯S2050.912.423.323 (3)173
O301—H3012⋯N203i0.912.042.919 (4)162

Symmetry code: (i) .

  1 in total

1.  (E)-[({[(3-Methyl-phen-yl)meth-yl]sulfan-yl}methane-thio-yl)amino](1-phenyl-pentyl-idene)amine.

Authors:  Georgiana Paulus; Karen A Crouse; Mohamed Ibrahim Mohamed Tahir; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-11
  1 in total

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