Literature DB >> 21754469

1-(3,5-Dinitro-benzo-yl)-3,3-dipropyl-thio-urea.

Sohail Saeed, Naghmana Rashid, Muhammad Sher, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The title thio-urea derivative, C(14)H(18)N(4)O(5)S, features two substantial twists between its component fragments: the dihedral angle between the SN(2)C (thio-urea) and ONC(2) (amide) residues is 48.89 (7)° and that between the benzene ring and the amide residue is 30.27 (7)°. In the crystal, mol-ecules are linked by bifurcated N-H⋯(O,S) hydrogen bonds, generating [001] supra-molecular chains.

Entities:  

Year:  2011        PMID: 21754469      PMCID: PMC3089134          DOI: 10.1107/S1600536811013638

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thio­urea derivatives, see: Venkatachalam et al., (2004 ▶); Saeed et al. (2011 ▶). For related thio­urea structures, see: Gunasekaran et al. (2010 ▶); Saeed et al. (2010 ▶); Dzulkifli et al. (2011 ▶).

Experimental

Crystal data

C14H18N4O5S M = 354.38 Monoclinic, a = 7.9406 (4) Å b = 21.2839 (10) Å c = 9.5967 (4) Å β = 94.379 (4)° V = 1617.17 (13) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 295 K 0.30 × 0.20 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.933, T max = 0.977 8055 measured reflections 3614 independent reflections 2878 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.154 S = 1.02 3614 reflections 221 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.04 e Å−3 Δρmin = −0.46 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811013638/hb5845sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811013638/hb5845Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N4O5SF(000) = 744
Mr = 354.38Dx = 1.456 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3443 reflections
a = 7.9406 (4) Åθ = 2.3–29.3°
b = 21.2839 (10) ŵ = 0.23 mm1
c = 9.5967 (4) ÅT = 295 K
β = 94.379 (4)°Prism, light yellow
V = 1617.17 (13) Å30.30 × 0.20 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector3614 independent reflections
Radiation source: SuperNova (Mo) X-ray Source2878 reflections with I > 2σ(I)
MirrorRint = 0.027
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.3°
ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −27→26
Tmin = 0.933, Tmax = 0.977l = −12→10
8055 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0697P)2 + 1.1729P] where P = (Fo2 + 2Fc2)/3
3614 reflections(Δ/σ)max = 0.001
221 parametersΔρmax = 1.04 e Å3
1 restraintΔρmin = −0.46 e Å3
xyzUiso*/Ueq
S10.37257 (8)0.21276 (3)0.24866 (6)0.0405 (2)
O10.7561 (2)0.24758 (9)0.29218 (19)0.0505 (5)
O20.5844 (3)0.44242 (11)0.7375 (2)0.0621 (6)
O30.8149 (3)0.49393 (11)0.7748 (3)0.0761 (7)
O41.2906 (3)0.44304 (11)0.5156 (3)0.0711 (7)
O51.3052 (3)0.35161 (11)0.4221 (2)0.0623 (6)
N10.4129 (2)0.15013 (9)0.4887 (2)0.0334 (4)
N20.5882 (3)0.23606 (9)0.4730 (2)0.0343 (4)
H20.581 (3)0.2455 (12)0.5607 (13)0.044 (7)*
N30.7311 (3)0.45149 (10)0.7190 (2)0.0451 (5)
N41.2306 (3)0.39224 (11)0.4807 (2)0.0440 (5)
C10.2706 (3)0.10939 (12)0.4387 (3)0.0433 (6)
H1A0.27870.07010.48990.052*
H1B0.28020.09990.34080.052*
C20.0973 (4)0.1384 (2)0.4550 (4)0.0746 (10)
H2A0.08190.17330.39030.089*
H2B0.01170.10730.42800.089*
C30.0687 (5)0.1608 (2)0.5930 (5)0.0882 (13)
H3A−0.04140.17950.59190.132*
H3B0.15280.19150.62170.132*
H3C0.07570.12620.65740.132*
C40.5096 (3)0.12842 (12)0.6168 (2)0.0396 (6)
H4A0.43290.10980.67910.047*
H4B0.56400.16410.66420.047*
C50.6417 (4)0.08077 (13)0.5847 (3)0.0510 (7)
H5A0.72230.10020.52700.061*
H5B0.58800.04640.53180.061*
C60.7351 (4)0.05486 (15)0.7163 (4)0.0659 (9)
H6A0.82110.02620.69120.099*
H6B0.65690.03320.77080.099*
H6C0.78620.08880.77010.099*
C70.4603 (3)0.19711 (10)0.4084 (2)0.0313 (5)
C80.7150 (3)0.26338 (11)0.4063 (2)0.0339 (5)
C90.8066 (3)0.31654 (10)0.4830 (2)0.0320 (5)
C100.7262 (3)0.35735 (11)0.5703 (2)0.0337 (5)
H100.61520.35020.59080.040*
C110.8147 (3)0.40847 (11)0.6256 (2)0.0350 (5)
C120.9793 (3)0.42129 (11)0.5982 (2)0.0367 (5)
H121.03610.45640.63520.044*
C131.0552 (3)0.37937 (11)0.5132 (2)0.0353 (5)
C140.9729 (3)0.32754 (11)0.4549 (2)0.0338 (5)
H141.02800.30040.39760.041*
U11U22U33U12U13U23
S10.0449 (4)0.0445 (4)0.0315 (3)−0.0042 (3)−0.0021 (2)0.0030 (2)
O10.0508 (11)0.0646 (12)0.0378 (10)−0.0172 (9)0.0146 (8)−0.0188 (9)
O20.0525 (12)0.0665 (14)0.0695 (14)0.0005 (10)0.0182 (10)−0.0207 (11)
O30.0734 (15)0.0652 (14)0.0909 (17)−0.0130 (12)0.0146 (13)−0.0475 (13)
O40.0519 (12)0.0681 (15)0.0941 (18)−0.0262 (11)0.0118 (12)−0.0156 (13)
O50.0438 (11)0.0814 (15)0.0636 (13)−0.0046 (10)0.0156 (10)−0.0176 (12)
N10.0346 (10)0.0325 (10)0.0331 (10)−0.0015 (8)0.0025 (8)−0.0001 (8)
N20.0410 (11)0.0364 (10)0.0259 (9)−0.0079 (8)0.0048 (8)−0.0052 (8)
N30.0514 (14)0.0432 (12)0.0409 (12)0.0023 (10)0.0037 (10)−0.0077 (10)
N40.0355 (11)0.0570 (14)0.0393 (11)−0.0067 (10)0.0005 (9)0.0007 (10)
C10.0423 (14)0.0389 (13)0.0486 (14)−0.0094 (11)0.0036 (11)−0.0017 (11)
C20.0510 (18)0.097 (3)0.076 (2)−0.0187 (18)0.0090 (16)−0.015 (2)
C30.059 (2)0.102 (3)0.107 (3)−0.015 (2)0.022 (2)−0.040 (3)
C40.0476 (14)0.0394 (13)0.0317 (12)−0.0022 (11)0.0031 (10)0.0047 (10)
C50.0528 (16)0.0482 (15)0.0500 (16)0.0068 (13)−0.0093 (13)−0.0058 (12)
C60.072 (2)0.0484 (17)0.072 (2)0.0038 (15)−0.0257 (17)0.0032 (15)
C70.0323 (11)0.0305 (11)0.0315 (11)0.0008 (9)0.0055 (9)−0.0042 (9)
C80.0363 (12)0.0348 (12)0.0308 (11)−0.0036 (9)0.0035 (9)−0.0035 (9)
C90.0362 (12)0.0337 (11)0.0259 (10)−0.0029 (9)0.0015 (9)0.0012 (9)
C100.0353 (12)0.0372 (12)0.0285 (11)−0.0025 (10)0.0019 (9)0.0023 (9)
C110.0398 (13)0.0344 (12)0.0304 (11)0.0023 (10)0.0006 (9)−0.0022 (9)
C120.0424 (13)0.0351 (12)0.0318 (11)−0.0063 (10)−0.0024 (10)−0.0029 (9)
C130.0341 (12)0.0416 (13)0.0299 (11)−0.0042 (10)0.0002 (9)0.0037 (9)
C140.0364 (12)0.0363 (12)0.0290 (11)0.0003 (10)0.0040 (9)−0.0005 (9)
S1—C71.668 (2)C3—H3B0.9600
O1—C81.214 (3)C3—H3C0.9600
O2—N31.207 (3)C4—C51.508 (4)
O3—N31.221 (3)C4—H4A0.9700
O4—N41.218 (3)C4—H4B0.9700
O5—N41.211 (3)C5—C61.519 (4)
N1—C71.334 (3)C5—H5A0.9700
N1—C41.473 (3)C5—H5B0.9700
N1—C11.475 (3)C6—H6A0.9600
N2—C81.364 (3)C6—H6B0.9600
N2—C71.417 (3)C6—H6C0.9600
N2—H20.871 (10)C8—C91.507 (3)
N3—C111.474 (3)C9—C141.388 (3)
N4—C131.476 (3)C9—C101.394 (3)
C1—C21.527 (4)C10—C111.379 (3)
C1—H1A0.9700C10—H100.9300
C1—H1B0.9700C11—C121.380 (3)
C2—C31.441 (5)C12—C131.378 (3)
C2—H2A0.9700C12—H120.9300
C2—H2B0.9700C13—C141.379 (3)
C3—H3A0.9600C14—H140.9300
C7—N1—C4124.44 (19)C4—C5—C6112.2 (2)
C7—N1—C1119.7 (2)C4—C5—H5A109.2
C4—N1—C1115.12 (19)C6—C5—H5A109.2
C8—N2—C7125.03 (19)C4—C5—H5B109.2
C8—N2—H2117.3 (18)C6—C5—H5B109.2
C7—N2—H2117.5 (18)H5A—C5—H5B107.9
O2—N3—O3123.6 (2)C5—C6—H6A109.5
O2—N3—C11118.3 (2)C5—C6—H6B109.5
O3—N3—C11118.1 (2)H6A—C6—H6B109.5
O5—N4—O4124.5 (2)C5—C6—H6C109.5
O5—N4—C13117.9 (2)H6A—C6—H6C109.5
O4—N4—C13117.5 (2)H6B—C6—H6C109.5
N1—C1—C2113.7 (2)N1—C7—N2114.2 (2)
N1—C1—H1A108.8N1—C7—S1124.35 (18)
C2—C1—H1A108.8N2—C7—S1121.38 (17)
N1—C1—H1B108.8O1—C8—N2124.3 (2)
C2—C1—H1B108.8O1—C8—C9119.7 (2)
H1A—C1—H1B107.7N2—C8—C9115.93 (19)
C3—C2—C1115.8 (3)C14—C9—C10119.9 (2)
C3—C2—H2A108.3C14—C9—C8117.6 (2)
C1—C2—H2A108.3C10—C9—C8122.3 (2)
C3—C2—H2B108.3C11—C10—C9118.6 (2)
C1—C2—H2B108.3C11—C10—H10120.7
H2A—C2—H2B107.4C9—C10—H10120.7
C2—C3—H3A109.5C10—C11—C12123.0 (2)
C2—C3—H3B109.5C10—C11—N3118.9 (2)
H3A—C3—H3B109.5C12—C11—N3118.1 (2)
C2—C3—H3C109.5C13—C12—C11116.6 (2)
H3A—C3—H3C109.5C13—C12—H12121.7
H3B—C3—H3C109.5C11—C12—H12121.7
N1—C4—C5111.5 (2)C12—C13—C14122.9 (2)
N1—C4—H4A109.3C12—C13—N4117.9 (2)
C5—C4—H4A109.3C14—C13—N4119.2 (2)
N1—C4—H4B109.3C13—C14—C9119.0 (2)
C5—C4—H4B109.3C13—C14—H14120.5
H4A—C4—H4B108.0C9—C14—H14120.5
C7—N1—C1—C2−79.3 (3)C8—C9—C10—C11−173.6 (2)
C4—N1—C1—C2110.2 (3)C9—C10—C11—C120.2 (3)
N1—C1—C2—C3−52.9 (4)C9—C10—C11—N3−179.4 (2)
C7—N1—C4—C5−86.1 (3)O2—N3—C11—C10−4.2 (3)
C1—N1—C4—C583.9 (3)O3—N3—C11—C10174.9 (2)
N1—C4—C5—C6−176.4 (2)O2—N3—C11—C12176.2 (2)
C4—N1—C7—N2−15.8 (3)O3—N3—C11—C12−4.8 (4)
C1—N1—C7—N2174.7 (2)C10—C11—C12—C13−1.2 (3)
C4—N1—C7—S1167.53 (18)N3—C11—C12—C13178.5 (2)
C1—N1—C7—S1−2.0 (3)C11—C12—C13—C141.2 (3)
C8—N2—C7—N1144.3 (2)C11—C12—C13—N4179.3 (2)
C8—N2—C7—S1−38.9 (3)O5—N4—C13—C12170.3 (2)
C7—N2—C8—O1−16.5 (4)O4—N4—C13—C12−9.3 (3)
C7—N2—C8—C9163.4 (2)O5—N4—C13—C14−11.5 (3)
O1—C8—C9—C14−27.4 (3)O4—N4—C13—C14168.9 (2)
N2—C8—C9—C14152.7 (2)C12—C13—C14—C9−0.3 (3)
O1—C8—C9—C10147.1 (2)N4—C13—C14—C9−178.4 (2)
N2—C8—C9—C10−32.8 (3)C10—C9—C14—C13−0.7 (3)
C14—C9—C10—C110.7 (3)C8—C9—C14—C13173.9 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.87 (1)2.53 (2)3.264 (3)142 (2)
N2—H2···S1i0.87 (1)2.69 (2)3.436 (2)144 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.87 (1)2.53 (2)3.264 (3)142 (2)
N2—H2⋯S1i0.87 (1)2.69 (2)3.436 (2)144 (2)

Symmetry code: (i) .

  5 in total

1.  Effect of stereochemistry on the anti-HIV activity of chiral thiourea compounds.

Authors:  T K Venkatachalam; C Mao; Fatih M Uckun
Journal:  Bioorg Med Chem       Date:  2004-08-01       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ethyl 2-[3-(4-nitro-benzo-yl)thio-ureido]benzoate.

Authors:  Sohail Saeed; Naghmana Rashid; Wing-Tak Wong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

4.  1-Benzoyl-3,3-dibutyl-thio-urea.

Authors:  N Gunasekaran; R Karvembu; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-25

5.  3-[(E)-(4-Chloro-benzyl-idene)amino]-1-phenyl-thio-urea.

Authors:  Nur Nadia Dzulkifli; Yang Farina; Bohari M Yamin; Ibrahim Baba; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12
  5 in total

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