Literature DB >> 21580777

Ethyl 2-[3-(4-nitro-benzo-yl)thio-ureido]benzoate.

Sohail Saeed, Naghmana Rashid, Wing-Tak Wong.   

Abstract

In the title compound, C(17)H(15)N(3)O(5)S, the nitro and thio-ureido groups are twisted by 7.2 (7) and 21.4 (2)°, respectively, from the nitro-benzene ring plane whereas the thio-ureido and the ethyl ester group make dihedral angles of 43.0 (1) and 18.0 (2)°, respectively, with the benzene rings to which they are attached. Intra-molecular N-H⋯O hydrogen-bonding inter-actions are observed. In the crystal, inter-molecular N-H⋯O hydrogen bonds connect the mol-ecules into chains running along the a axis.

Entities:  

Year:  2010        PMID: 21580777      PMCID: PMC2984025          DOI: 10.1107/S1600536810011116

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry of thio­urea derivatives, see: Ugur et al. (2006 ▶). For related compounds with anti­tubercular properties, see: Huebner et al. (1953 ▶) and for other biological activities of thio­urea compounds, see: Glasser & Doughty (1964 ▶). For related structures, see: Saeed et al. (2008a ▶,b ▶). For the cytotoxicity of anti­cancer drugs to normal cells in cancer therapy, see: Saeed et al. (2010 ▶). For the herbicidal activity of thio­urea derivatives, see: Zheng et al. (2004 ▶).

Experimental

Crystal data

C17H15N3O5S M = 373.38 Orthorhombic, a = 9.0698 (13) Å b = 15.778 (2) Å c = 24.889 (4) Å V = 3561.7 (9) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 295 K 0.36 × 0.25 × 0.03 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.927, T max = 0.994 23121 measured reflections 4362 independent reflections 2877 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.171 S = 1.07 4362 reflections 244 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.63 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT and CrystalStructure (Rigaku/MSC and Rigaku, 2006 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011116/si2248sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011116/si2248Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N3O5SDx = 1.393 Mg m3
Mr = 373.38Melting point: 438 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 23121 reflections
a = 9.0698 (13) Åθ = 1.6–28.3°
b = 15.778 (2) ŵ = 0.22 mm1
c = 24.889 (4) ÅT = 295 K
V = 3561.7 (9) Å3Plate, yellow
Z = 80.36 × 0.25 × 0.03 mm
F(000) = 1552
Bruker SMART 1000 CCD diffractometer4362 independent reflections
Radiation source: fine-focus sealed tube2877 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scanθmax = 28.3°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→11
Tmin = 0.927, Tmax = 0.994k = −21→21
23121 measured reflectionsl = −33→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.171H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0709P)2 + 2.2491P] where P = (Fo2 + 2Fc2)/3
4362 reflections(Δ/σ)max < 0.001
244 parametersΔρmax = 0.63 e Å3
6 restraintsΔρmin = −0.32 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.51557 (9)0.11637 (5)0.20685 (4)0.0587 (3)
O10.3603 (6)0.5330 (3)0.44429 (14)0.1331 (16)
O20.1862 (4)0.6034 (2)0.40527 (18)0.1245 (13)
O30.1165 (2)0.29106 (13)0.21392 (8)0.0476 (5)
O40.0879 (3)0.24551 (13)0.09489 (9)0.0641 (6)
O50.0925 (3)0.19226 (14)0.01211 (9)0.0662 (7)
N10.2655 (5)0.5415 (2)0.41024 (19)0.0936 (13)
N20.3396 (2)0.23826 (15)0.23814 (10)0.0428 (5)
N30.2463 (3)0.15722 (15)0.16898 (9)0.0414 (5)
C10.2484 (4)0.4741 (2)0.36882 (15)0.0648 (9)
C20.1512 (4)0.4866 (2)0.32689 (17)0.0690 (10)
H20.09370.53530.32500.083*
C30.1416 (4)0.4242 (2)0.28770 (13)0.0552 (8)
H30.07580.43060.25930.066*
C40.2296 (3)0.35235 (17)0.29062 (11)0.0423 (6)
C50.3214 (3)0.3409 (2)0.33479 (12)0.0516 (7)
H50.37640.29140.33790.062*
C60.3312 (4)0.4026 (2)0.37399 (13)0.0630 (9)
H60.39320.39550.40340.076*
C70.2219 (3)0.29142 (16)0.24481 (10)0.0388 (6)
C80.3576 (3)0.17016 (17)0.20286 (10)0.0411 (6)
C90.2299 (3)0.08868 (17)0.13261 (11)0.0423 (6)
C100.2679 (4)0.00680 (19)0.14754 (13)0.0575 (8)
H100.3060−0.00300.18170.069*
C110.2504 (4)−0.0600 (2)0.11286 (15)0.0661 (9)
H110.2767−0.11440.12360.079*
C120.1938 (4)−0.0466 (2)0.06204 (15)0.0659 (9)
H120.1837−0.09160.03820.079*
C130.1526 (4)0.03375 (19)0.04696 (13)0.0552 (8)
H130.11380.04240.01280.066*
C140.1677 (3)0.10259 (17)0.08161 (11)0.0435 (6)
C150.1132 (3)0.18718 (18)0.06483 (12)0.0472 (7)
C160.0290 (5)0.2705 (2)−0.00865 (15)0.0782 (11)
H16A0.09070.31840.00100.094*
H16B−0.06840.27940.00640.094*
C170.0198 (5)0.2627 (3)−0.06722 (17)0.0872 (13)
H17A−0.02200.3135−0.08200.105*
H17B−0.04140.2152−0.07630.105*
H17C0.11680.2543−0.08170.105*
H2N0.409 (4)0.2503 (19)0.2566 (13)0.047 (9)*
H3N0.177 (3)0.200 (2)0.1694 (12)0.050 (8)*
U11U22U33U12U13U23
S10.0427 (4)0.0648 (5)0.0686 (5)0.0143 (3)−0.0073 (4)−0.0180 (4)
O10.208 (5)0.116 (3)0.075 (2)−0.037 (3)−0.004 (3)−0.037 (2)
O20.099 (2)0.104 (2)0.171 (3)−0.0053 (18)0.0240 (19)−0.073 (2)
O30.0353 (10)0.0564 (12)0.0511 (11)0.0026 (8)−0.0027 (8)0.0000 (9)
O40.0893 (17)0.0445 (12)0.0584 (13)0.0126 (11)−0.0185 (12)−0.0062 (10)
O50.0994 (19)0.0516 (13)0.0476 (12)0.0076 (12)−0.0137 (12)0.0037 (10)
N10.094 (3)0.073 (2)0.114 (3)−0.026 (2)0.042 (2)−0.039 (2)
N20.0302 (11)0.0540 (14)0.0442 (13)0.0015 (10)−0.0021 (10)−0.0106 (10)
N30.0400 (12)0.0416 (12)0.0425 (12)0.0015 (10)−0.0035 (10)−0.0026 (10)
C10.065 (2)0.062 (2)0.067 (2)−0.0163 (17)0.0258 (18)−0.0232 (17)
C20.066 (2)0.0466 (18)0.094 (3)0.0033 (15)0.027 (2)−0.0093 (18)
C30.0485 (17)0.0510 (17)0.0661 (19)0.0060 (13)0.0097 (15)0.0010 (15)
C40.0356 (13)0.0448 (14)0.0466 (14)−0.0019 (11)0.0115 (11)−0.0026 (12)
C50.0468 (16)0.0601 (18)0.0479 (16)0.0042 (13)0.0045 (13)−0.0090 (14)
C60.058 (2)0.083 (2)0.0482 (17)−0.0072 (18)0.0094 (15)−0.0178 (16)
C70.0310 (12)0.0442 (14)0.0410 (13)−0.0020 (10)0.0057 (11)0.0024 (11)
C80.0379 (13)0.0476 (15)0.0378 (13)−0.0009 (11)0.0031 (11)−0.0008 (11)
C90.0416 (14)0.0404 (14)0.0448 (14)−0.0014 (11)0.0001 (12)−0.0015 (11)
C100.068 (2)0.0458 (16)0.0589 (19)0.0016 (15)−0.0138 (16)0.0046 (14)
C110.079 (2)0.0407 (17)0.079 (2)0.0046 (16)−0.0134 (19)0.0007 (15)
C120.086 (3)0.0419 (17)0.070 (2)0.0032 (16)−0.0107 (19)−0.0121 (15)
C130.067 (2)0.0484 (17)0.0496 (16)0.0006 (14)−0.0096 (15)−0.0070 (13)
C140.0460 (15)0.0416 (14)0.0429 (14)−0.0026 (11)−0.0026 (12)−0.0010 (11)
C150.0489 (16)0.0447 (16)0.0481 (16)−0.0025 (12)−0.0088 (13)0.0004 (12)
C160.107 (3)0.059 (2)0.069 (2)0.012 (2)−0.021 (2)0.0121 (18)
C170.103 (3)0.083 (3)0.076 (3)−0.005 (2)−0.026 (2)0.021 (2)
S1—C81.668 (3)C4—C71.493 (4)
O1—N11.215 (6)C5—C61.381 (4)
O2—N11.219 (5)C5—H50.9300
O3—C71.227 (3)C6—H60.9300
O4—C151.208 (3)C9—C101.388 (4)
O5—C151.328 (3)C9—C141.406 (4)
O5—C161.457 (4)C10—C111.371 (4)
N1—C11.489 (5)C10—H100.9300
N2—C71.368 (3)C11—C121.381 (5)
N2—C81.397 (3)C11—H110.9300
N2—H2N0.80 (3)C12—C131.373 (5)
N3—C81.331 (3)C12—H120.9300
N3—C91.418 (3)C13—C141.394 (4)
N3—H3N0.91 (3)C13—H130.9300
C1—C61.361 (5)C14—C151.483 (4)
C1—C21.380 (6)C16—C171.465 (6)
C2—C31.388 (5)C16—H16A0.9700
C2—H20.9300C16—H16B0.9700
C3—C41.388 (4)C17—H17A0.9600
C3—H30.9300C17—H17B0.9600
C4—C51.391 (4)C17—H17C0.9600
C15—O5—C16117.2 (3)C10—C9—C14119.1 (3)
O1—N1—O2125.2 (4)C10—C9—N3120.9 (3)
O1—N1—C1118.6 (4)C14—C9—N3119.9 (2)
O2—N1—C1116.1 (5)C11—C10—C9121.2 (3)
C7—N2—C8129.7 (2)C11—C10—H10119.4
C7—N2—H2N113 (2)C9—C10—H10119.4
C8—N2—H2N117 (2)C10—C11—C12120.1 (3)
C8—N3—C9126.9 (2)C10—C11—H11119.9
C8—N3—H3N113.5 (19)C12—C11—H11119.9
C9—N3—H3N119.5 (19)C13—C12—C11119.5 (3)
C6—C1—C2122.8 (3)C13—C12—H12120.2
C6—C1—N1117.9 (4)C11—C12—H12120.2
C2—C1—N1119.2 (4)C12—C13—C14121.6 (3)
C1—C2—C3118.0 (3)C12—C13—H13119.2
C1—C2—H2121.0C14—C13—H13119.2
C3—C2—H2121.0C13—C14—C9118.4 (3)
C2—C3—C4120.4 (3)C13—C14—C15119.6 (3)
C2—C3—H3119.8C9—C14—C15121.9 (2)
C4—C3—H3119.8O4—C15—O5122.6 (3)
C3—C4—C5119.4 (3)O4—C15—C14125.1 (3)
C3—C4—C7117.3 (3)O5—C15—C14112.3 (2)
C5—C4—C7123.2 (2)O5—C16—C17107.7 (3)
C6—C5—C4120.4 (3)O5—C16—H16A110.2
C6—C5—H5119.8C17—C16—H16A110.2
C4—C5—H5119.8O5—C16—H16B110.2
C1—C6—C5118.8 (3)C17—C16—H16B110.2
C1—C6—H6120.6H16A—C16—H16B108.5
C5—C6—H6120.6C16—C17—H17A109.5
O3—C7—N2122.0 (2)C16—C17—H17B109.5
O3—C7—C4121.2 (2)H17A—C17—H17B109.5
N2—C7—C4116.8 (2)C16—C17—H17C109.5
N3—C8—N2115.3 (2)H17A—C17—H17C109.5
N3—C8—S1127.7 (2)H17B—C17—H17C109.5
N2—C8—S1117.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O3i0.80 (4)2.12 (4)2.903 (3)165 (3)
N3—H3N···O30.91 (3)1.91 (3)2.664 (3)139 (3)
N3—H3N···O40.91 (3)2.15 (3)2.721 (3)120 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O3i0.80 (4)2.12 (4)2.903 (3)165 (3)
N3—H3N⋯O30.91 (3)1.91 (3)2.664 (3)139 (3)
N3—H3N⋯O40.91 (3)2.15 (3)2.721 (3)120 (2)

Symmetry code: (i) .

  6 in total

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3.  Synthesis, characterization and biological evaluation of some thiourea derivatives bearing benzothiazole moiety as potential antimicrobial and anticancer agents.

Authors:  Sohail Saeed; Naghmana Rashid; Peter G Jones; Muhammad Ali; Rizwan Hussain
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4.  Transformation of herbicide propachlor by an agrochemical thiourea.

Authors:  Wei Zheng; Scott R Yates; Sharon K Papiernik; Mingxin Guo
Journal:  Environ Sci Technol       Date:  2004-12-15       Impact factor: 9.028

5.  Ethyl 4-(3-benzoyl-thio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Uzma Yunus; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-12

6.  Ethyl 4-(3-butyrylthio-ureido)benzoate.

Authors:  Sohail Saeed; Moazzam Hussain Bhatti; Muhammad Kalim Tahir; Peter G Jones
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28
  6 in total
  3 in total

1.  Ethyl 2-[3-(3,5-Dinitrobenzo-yl)thio-ureido]benzoate.

Authors:  Sohail Saeed; Naghmana Rashid; Moazzam H Bhatti; Wing-Tak Wong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  1-(3,5-Dinitro-benzo-yl)-3,3-dipropyl-thio-urea.

Authors:  Sohail Saeed; Naghmana Rashid; Muhammad Sher; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16

3.  3-Cyclo-hexyl-1-(3,5-dinitro-benzo-yl)thio-urea.

Authors:  Sohail Saeed; Naghmana Rashid; Muhammad Sher; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-16
  3 in total

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