| Literature DB >> 21754411 |
Younes Ouzidan, Youssef Kandri Rodi, Jerry P Jasinski, Raymond J Butcher, James A Golen, Lahcen El Ammari.
Abstract
In the title compound, C(13)H(10)N(2)O, the fused-ring system is essentially planar, the largest deviation from the mean plane being 0.015 (1) Å. The two propynyl groups are nearly perpendicular to the benzimidazole plane, making dihedral angles of 85 (3) and 80 (2) °, and point in opposite directions. There are two short inter-molecular C-H⋯O contacts to the carbonyl O atom, one involving the acetyl-enic H atom and the other a H atom of the methyl-ene group.Entities:
Year: 2011 PMID: 21754411 PMCID: PMC3089259 DOI: 10.1107/S1600536811012578
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H10N2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3141 reflections |
| θ = 3.4–32.2° | |
| µ = 0.08 mm−1 | |
| β = 101.459 (6)° | Block, colorless |
| 0.42 × 0.41 × 0.20 mm | |
| Oxford Diffraction Xcalibur E Gemini diffractometer | 2631 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 2244 reflections with |
| graphite | |
| Detector resolution: 16.1500 pixels mm-1 | θmax = 27.9°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5295 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2631 reflections | Δρmax = 0.19 e Å−3 |
| 146 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.042 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.19931 (12) | 0.56190 (5) | 0.15005 (11) | 0.0468 (2) | |
| N1 | 0.13961 (12) | 0.46462 (5) | 0.32281 (11) | 0.0338 (2) | |
| N2 | 0.29126 (12) | 0.56670 (5) | 0.42832 (12) | 0.0356 (2) | |
| C1 | 0.20862 (14) | 0.53446 (6) | 0.28398 (14) | 0.0346 (3) | |
| C2 | 0.18290 (13) | 0.45232 (6) | 0.48810 (13) | 0.0319 (2) | |
| C3 | 0.14722 (15) | 0.39128 (7) | 0.58201 (15) | 0.0400 (3) | |
| H3A | 0.0826 | 0.3470 | 0.5362 | 0.048* | |
| C4 | 0.21003 (18) | 0.39733 (9) | 0.74692 (16) | 0.0493 (3) | |
| H4A | 0.1871 | 0.3565 | 0.8153 | 0.059* | |
| C5 | 0.30518 (18) | 0.46160 (9) | 0.81362 (16) | 0.0524 (4) | |
| H5A | 0.3463 | 0.4638 | 0.9267 | 0.063* | |
| C6 | 0.34172 (16) | 0.52287 (8) | 0.71876 (15) | 0.0447 (3) | |
| H6A | 0.4073 | 0.5669 | 0.7646 | 0.054* | |
| C7 | 0.27878 (14) | 0.51721 (6) | 0.55512 (14) | 0.0337 (3) | |
| C8 | 0.06303 (16) | 0.40760 (7) | 0.20295 (15) | 0.0398 (3) | |
| H8A | 0.0159 | 0.4343 | 0.1000 | 0.048* | |
| H8B | −0.0362 | 0.3810 | 0.2383 | 0.048* | |
| C9 | 0.19408 (17) | 0.34996 (7) | 0.17828 (16) | 0.0438 (3) | |
| C10 | 0.3035 (2) | 0.30587 (10) | 0.1615 (2) | 0.0748 (5) | |
| H10 | 0.3927 | 0.2699 | 0.1479 | 0.090* | |
| C11 | 0.39412 (16) | 0.63759 (7) | 0.43751 (18) | 0.0443 (3) | |
| H11A | 0.4208 | 0.6484 | 0.3302 | 0.053* | |
| H11B | 0.5076 | 0.6293 | 0.5131 | 0.053* | |
| C12 | 0.30770 (17) | 0.70582 (7) | 0.48968 (16) | 0.0454 (3) | |
| C13 | 0.2472 (2) | 0.76260 (9) | 0.5312 (2) | 0.0678 (5) | |
| H13 | 0.1980 | 0.8088 | 0.5649 | 0.081* |
| O1 | 0.0561 (5) | 0.0414 (5) | 0.0426 (5) | 0.0004 (4) | 0.0090 (4) | 0.0060 (4) |
| N1 | 0.0375 (5) | 0.0275 (4) | 0.0351 (5) | 0.0017 (4) | 0.0043 (4) | −0.0037 (4) |
| N2 | 0.0349 (5) | 0.0290 (5) | 0.0430 (5) | −0.0006 (4) | 0.0080 (4) | −0.0051 (4) |
| C1 | 0.0339 (5) | 0.0297 (5) | 0.0405 (6) | 0.0054 (4) | 0.0079 (5) | −0.0013 (4) |
| C2 | 0.0276 (5) | 0.0317 (5) | 0.0363 (6) | 0.0059 (4) | 0.0060 (4) | −0.0026 (4) |
| C3 | 0.0359 (6) | 0.0374 (6) | 0.0481 (7) | 0.0031 (5) | 0.0118 (5) | 0.0028 (5) |
| C4 | 0.0470 (7) | 0.0577 (8) | 0.0457 (7) | 0.0070 (6) | 0.0150 (6) | 0.0114 (6) |
| C5 | 0.0489 (7) | 0.0727 (9) | 0.0351 (6) | 0.0086 (7) | 0.0068 (5) | 0.0004 (6) |
| C6 | 0.0367 (6) | 0.0538 (7) | 0.0419 (7) | 0.0025 (5) | 0.0034 (5) | −0.0114 (6) |
| C7 | 0.0278 (5) | 0.0348 (5) | 0.0390 (6) | 0.0055 (4) | 0.0077 (4) | −0.0044 (4) |
| C8 | 0.0396 (6) | 0.0349 (6) | 0.0413 (6) | −0.0008 (5) | −0.0003 (5) | −0.0066 (5) |
| C9 | 0.0525 (7) | 0.0328 (6) | 0.0440 (7) | −0.0025 (5) | 0.0043 (6) | −0.0082 (5) |
| C10 | 0.0733 (11) | 0.0515 (9) | 0.0976 (14) | 0.0171 (8) | 0.0124 (10) | −0.0250 (9) |
| C11 | 0.0358 (6) | 0.0355 (6) | 0.0628 (8) | −0.0057 (5) | 0.0128 (6) | −0.0079 (6) |
| C12 | 0.0447 (7) | 0.0340 (6) | 0.0536 (8) | −0.0026 (5) | 0.0002 (6) | −0.0054 (5) |
| C13 | 0.0771 (11) | 0.0436 (8) | 0.0749 (11) | 0.0136 (7) | −0.0038 (9) | −0.0170 (7) |
| O1—C1 | 1.2194 (14) | C5—H5A | 0.9500 |
| N1—C1 | 1.3800 (14) | C6—C7 | 1.3806 (17) |
| N1—C2 | 1.3919 (14) | C6—H6A | 0.9500 |
| N1—C8 | 1.4515 (14) | C8—C9 | 1.4622 (17) |
| N2—C1 | 1.3802 (15) | C8—H8A | 0.9900 |
| N2—C7 | 1.3899 (15) | C8—H8B | 0.9900 |
| N2—C11 | 1.4491 (14) | C9—C10 | 1.166 (2) |
| C2—C3 | 1.3782 (16) | C10—H10 | 0.9500 |
| C2—C7 | 1.3965 (15) | C11—C12 | 1.4615 (17) |
| C3—C4 | 1.3911 (19) | C11—H11A | 0.9900 |
| C3—H3A | 0.9500 | C11—H11B | 0.9900 |
| C4—C5 | 1.385 (2) | C12—C13 | 1.1665 (19) |
| C4—H4A | 0.9500 | C13—H13 | 0.9500 |
| C5—C6 | 1.388 (2) | ||
| C1—N1—C2 | 110.22 (9) | C7—C6—H6A | 121.4 |
| C1—N1—C8 | 122.92 (10) | C5—C6—H6A | 121.4 |
| C2—N1—C8 | 125.91 (9) | C6—C7—N2 | 132.11 (11) |
| C1—N2—C7 | 110.49 (9) | C6—C7—C2 | 121.24 (11) |
| C1—N2—C11 | 122.56 (10) | N2—C7—C2 | 106.65 (10) |
| C7—N2—C11 | 126.50 (10) | N1—C8—C9 | 111.07 (10) |
| O1—C1—N1 | 127.23 (11) | N1—C8—H8A | 109.4 |
| O1—C1—N2 | 127.08 (11) | C9—C8—H8A | 109.4 |
| N1—C1—N2 | 105.69 (10) | N1—C8—H8B | 109.4 |
| C3—C2—N1 | 131.49 (11) | C9—C8—H8B | 109.4 |
| C3—C2—C7 | 121.59 (11) | H8A—C8—H8B | 108.0 |
| N1—C2—C7 | 106.92 (9) | C10—C9—C8 | 177.43 (15) |
| C2—C3—C4 | 117.04 (12) | C9—C10—H10 | 180.0 |
| C2—C3—H3A | 121.5 | N2—C11—C12 | 114.29 (10) |
| C4—C3—H3A | 121.5 | N2—C11—H11A | 108.7 |
| C5—C4—C3 | 121.47 (12) | C12—C11—H11A | 108.7 |
| C5—C4—H4A | 119.3 | N2—C11—H11B | 108.7 |
| C3—C4—H4A | 119.3 | C12—C11—H11B | 108.7 |
| C4—C5—C6 | 121.41 (13) | H11A—C11—H11B | 107.6 |
| C4—C5—H5A | 119.3 | C13—C12—C11 | 176.21 (15) |
| C6—C5—H5A | 119.3 | C12—C13—H13 | 180.0 |
| C7—C6—C5 | 117.25 (12) | ||
| C2—N1—C1—O1 | 177.95 (11) | C4—C5—C6—C7 | 0.21 (19) |
| C8—N1—C1—O1 | 8.50 (18) | C5—C6—C7—N2 | −179.89 (11) |
| C2—N1—C1—N2 | −1.76 (11) | C5—C6—C7—C2 | −0.23 (17) |
| C8—N1—C1—N2 | −171.22 (9) | C1—N2—C7—C6 | 178.83 (11) |
| C7—N2—C1—O1 | −178.10 (11) | C11—N2—C7—C6 | 6.44 (19) |
| C11—N2—C1—O1 | −5.36 (18) | C1—N2—C7—C2 | −0.87 (12) |
| C7—N2—C1—N1 | 1.61 (12) | C11—N2—C7—C2 | −173.26 (10) |
| C11—N2—C1—N1 | 174.35 (9) | C3—C2—C7—C6 | −0.08 (16) |
| C1—N1—C2—C3 | −178.62 (11) | N1—C2—C7—C6 | −179.97 (10) |
| C8—N1—C2—C3 | −9.55 (18) | C3—C2—C7—N2 | 179.66 (10) |
| C1—N1—C2—C7 | 1.26 (11) | N1—C2—C7—N2 | −0.23 (11) |
| C8—N1—C2—C7 | 170.33 (10) | C1—N1—C8—C9 | 93.46 (13) |
| N1—C2—C3—C4 | −179.74 (11) | C2—N1—C8—C9 | −74.31 (14) |
| C7—C2—C3—C4 | 0.40 (16) | C1—N2—C11—C12 | 105.88 (13) |
| C2—C3—C4—C5 | −0.42 (18) | C7—N2—C11—C12 | −82.58 (15) |
| C3—C4—C5—C6 | 0.1 (2) |
| H··· | ||||
| C8—H8A···O1i | 0.99 | 2.42 | 3.3096 (15) | 149 |
| C13—H13···O1ii | 0.95 | 2.34 | 3.2252 (17) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C8—H8 | 0.99 | 2.42 | 3.3096 (15) | 149 |
| C13—H13⋯O1ii | 0.95 | 2.34 | 3.2252 (17) | 156 |
Symmetry codes: (i) ; (ii) .