Literature DB >> 22606173

5-Nitro-1-(prop-2-yn-1-yl)-2,3-dihydro-1H-1,3-benzodiazol-2-one.

Younes Ouzidan, Youssef Kandri Rodi, Hafid Zouihri, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

In the two independent mol-ecules of the title compound, C(10)H(7)N(3)O(3), the nitro substitutent is twisted slightly with respect to the benzodiazol fused-ring system [dihedral angles = 4.9 (3) and 8.5 (1)°]. The two independent mol-ecules are disposed about a pseudo inversion center and are held together by N-H⋯O hydrogen bonds. The supramolecular dimer is essentially planar [dihedral angle between the fused rings = 2.0 (1)°]. Adjacent dimers are linked by acetyl-ene-nitro C-H⋯O inter-actions, generating a ribbon motif along (110).

Entities:  

Year:  2012        PMID: 22606173      PMCID: PMC3344170          DOI: 10.1107/S1600536812013177

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Ouzidan et al. (2011a ▶,b ▶,c ▶).

Experimental

Crystal data

C10H7N3O3 M = 217.19 Triclinic, a = 7.2541 (2) Å b = 10.0362 (2) Å c = 14.6793 (3) Å α = 100.978 (1)° β = 92.047 (1)° γ = 109.043 (1)° V = 986.20 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.27 × 0.22 × 0.13 mm

Data collection

Bruker APEX DUO diffractometer 20686 measured reflections 4506 independent reflections 2855 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.158 S = 1.05 4506 reflections 305 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812013177/bt5859sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812013177/bt5859Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812013177/bt5859Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7N3O3Z = 4
Mr = 217.19F(000) = 448
Triclinic, P1Dx = 1.463 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2541 (2) ÅCell parameters from 5674 reflections
b = 10.0362 (2) Åθ = 2.2–28.0°
c = 14.6793 (3) ŵ = 0.11 mm1
α = 100.978 (1)°T = 293 K
β = 92.047 (1)°Prism, yellow
γ = 109.043 (1)°0.27 × 0.22 × 0.13 mm
V = 986.20 (4) Å3
Bruker APEX DUO diffractometer2855 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
Graphite monochromatorθmax = 27.5°, θmin = 2.2°
ω scansh = −9→9
20686 measured reflectionsk = −13→12
4506 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0746P)2 + 0.2589P] where P = (Fo2 + 2Fc2)/3
4506 reflections(Δ/σ)max = 0.001
305 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.24 e Å3
xyzUiso*/Ueq
O10.4863 (2)0.28214 (16)0.32061 (10)0.0583 (4)
O20.2729 (3)0.70175 (19)−0.06407 (12)0.0780 (5)
O30.4106 (3)0.84006 (18)0.06741 (13)0.0826 (6)
O40.7053 (2)0.67457 (15)0.41638 (10)0.0556 (4)
O51.0136 (4)0.2778 (2)0.79280 (13)0.1056 (8)
O60.8109 (3)0.13338 (17)0.67890 (13)0.0826 (6)
N10.4993 (2)0.47954 (18)0.25677 (11)0.0459 (4)
N20.3361 (2)0.26206 (16)0.17380 (10)0.0438 (4)
N30.3367 (2)0.72031 (19)0.01736 (13)0.0535 (4)
N40.7143 (2)0.48027 (17)0.47997 (11)0.0416 (4)
N50.8738 (2)0.70106 (16)0.55973 (10)0.0429 (4)
N60.9101 (3)0.25456 (19)0.72058 (13)0.0583 (5)
C10.4468 (3)0.3367 (2)0.25799 (13)0.0447 (4)
C20.2539 (3)0.1058 (2)0.14690 (15)0.0555 (5)
H2A0.30070.06440.19360.067*
H2B0.29880.07340.08800.067*
C30.0406 (4)0.0549 (2)0.13742 (15)0.0585 (6)
C4−0.1296 (5)0.0194 (3)0.1295 (2)0.0859 (9)
C50.3154 (3)0.35855 (19)0.12192 (12)0.0391 (4)
C60.2169 (3)0.3381 (2)0.03563 (13)0.0450 (4)
H60.14710.24610.00110.054*
C70.2259 (3)0.4598 (2)0.00241 (13)0.0454 (4)
H70.16280.4505−0.05590.054*
C80.3287 (3)0.5950 (2)0.05579 (13)0.0418 (4)
C90.4281 (3)0.6184 (2)0.14315 (13)0.0428 (4)
H90.49610.71070.17780.051*
C100.4197 (2)0.49734 (19)0.17501 (12)0.0391 (4)
C110.7577 (3)0.6231 (2)0.47796 (13)0.0432 (4)
C120.9419 (3)0.8575 (2)0.58554 (15)0.0552 (5)
H12A0.88990.88700.64300.066*
H12B0.89160.89430.53720.066*
C131.1548 (4)0.9205 (2)0.59851 (15)0.0621 (6)
C141.3251 (5)0.9698 (3)0.6118 (2)0.0942 (10)
C150.9034 (3)0.60770 (18)0.61264 (12)0.0381 (4)
C161.0082 (3)0.6333 (2)0.69790 (13)0.0452 (4)
H161.07560.72670.73100.054*
C171.0092 (3)0.5145 (2)0.73252 (13)0.0463 (5)
H171.07860.52710.78980.056*
C180.9065 (3)0.3768 (2)0.68142 (13)0.0432 (4)
C190.7999 (3)0.34865 (19)0.59536 (12)0.0404 (4)
H190.73180.25520.56250.048*
C200.8012 (2)0.46764 (19)0.56177 (12)0.0371 (4)
H10.574 (3)0.554 (3)0.3093 (17)0.073 (7)*
H40.645 (3)0.409 (2)0.4297 (16)0.060 (6)*
H41−0.263 (6)−0.002 (4)0.122 (3)0.138 (14)*
H1411.454 (5)1.011 (3)0.621 (2)0.118 (12)*
U11U22U33U12U13U23
O10.0683 (9)0.0531 (9)0.0505 (8)0.0149 (7)−0.0098 (7)0.0175 (7)
O20.0971 (13)0.0713 (11)0.0680 (11)0.0265 (10)−0.0142 (9)0.0289 (9)
O30.1019 (14)0.0448 (10)0.0931 (13)0.0164 (9)−0.0181 (10)0.0160 (9)
O40.0672 (9)0.0501 (8)0.0493 (8)0.0188 (7)−0.0090 (7)0.0151 (7)
O50.169 (2)0.0641 (12)0.0750 (12)0.0367 (12)−0.0557 (13)0.0130 (10)
O60.1049 (14)0.0406 (9)0.0919 (13)0.0138 (9)−0.0253 (10)0.0156 (9)
N10.0484 (9)0.0429 (9)0.0398 (9)0.0081 (7)−0.0054 (7)0.0082 (7)
N20.0512 (9)0.0392 (9)0.0398 (8)0.0157 (7)0.0000 (7)0.0060 (7)
N30.0492 (10)0.0468 (10)0.0649 (12)0.0145 (8)0.0006 (8)0.0172 (9)
N40.0445 (9)0.0383 (9)0.0376 (8)0.0107 (7)−0.0035 (7)0.0050 (7)
N50.0526 (9)0.0351 (8)0.0396 (8)0.0146 (7)0.0018 (7)0.0055 (7)
N60.0762 (12)0.0428 (10)0.0556 (11)0.0211 (9)−0.0062 (9)0.0104 (8)
C10.0451 (10)0.0465 (11)0.0416 (10)0.0147 (8)0.0014 (8)0.0092 (9)
C20.0770 (15)0.0389 (11)0.0518 (12)0.0243 (10)0.0004 (10)0.0051 (9)
C30.0795 (16)0.0329 (10)0.0503 (12)0.0084 (10)−0.0016 (11)−0.0006 (9)
C40.082 (2)0.0561 (16)0.088 (2)−0.0025 (14)0.0001 (16)−0.0130 (14)
C50.0418 (9)0.0385 (10)0.0380 (9)0.0159 (8)0.0051 (7)0.0064 (8)
C60.0519 (11)0.0399 (10)0.0384 (10)0.0142 (8)−0.0013 (8)0.0008 (8)
C70.0472 (10)0.0484 (11)0.0404 (10)0.0175 (9)−0.0019 (8)0.0081 (8)
C80.0400 (9)0.0437 (10)0.0446 (10)0.0156 (8)0.0057 (8)0.0131 (8)
C90.0402 (10)0.0371 (10)0.0460 (11)0.0087 (7)0.0039 (8)0.0046 (8)
C100.0356 (9)0.0422 (10)0.0363 (9)0.0106 (7)0.0031 (7)0.0059 (8)
C110.0428 (10)0.0440 (11)0.0422 (10)0.0144 (8)0.0033 (8)0.0089 (8)
C120.0725 (14)0.0361 (11)0.0553 (12)0.0177 (10)0.0026 (10)0.0076 (9)
C130.0790 (17)0.0394 (11)0.0541 (13)0.0046 (11)−0.0032 (11)0.0067 (10)
C140.081 (2)0.0721 (19)0.096 (2)−0.0106 (16)−0.0107 (17)0.0092 (16)
C150.0429 (9)0.0350 (9)0.0360 (9)0.0137 (7)0.0070 (7)0.0054 (7)
C160.0537 (11)0.0372 (10)0.0379 (10)0.0119 (8)−0.0001 (8)−0.0008 (8)
C170.0558 (11)0.0465 (11)0.0344 (9)0.0180 (9)−0.0018 (8)0.0032 (8)
C180.0498 (10)0.0393 (10)0.0415 (10)0.0173 (8)0.0039 (8)0.0075 (8)
C190.0432 (10)0.0337 (9)0.0401 (10)0.0111 (7)0.0020 (8)0.0021 (7)
C200.0365 (9)0.0399 (10)0.0337 (9)0.0138 (7)0.0040 (7)0.0036 (7)
O1—C11.226 (2)C4—H410.92 (4)
O2—N31.224 (2)C5—C61.377 (2)
O3—N31.219 (2)C5—C101.406 (2)
O4—C111.229 (2)C6—C71.382 (3)
O5—N61.215 (2)C6—H60.9300
O6—N61.219 (2)C7—C81.380 (3)
N1—C11.362 (2)C7—H70.9300
N1—C101.380 (2)C8—C91.389 (3)
N1—H10.96 (2)C9—C101.367 (3)
N2—C51.381 (2)C9—H90.9300
N2—C11.385 (2)C12—C131.455 (3)
N2—C21.452 (2)C12—H12A0.9700
N3—C81.459 (2)C12—H12B0.9700
N4—C111.370 (2)C13—C141.164 (4)
N4—C201.383 (2)C14—H1410.88 (3)
N4—H40.92 (2)C15—C161.375 (2)
N5—C111.379 (2)C15—C201.401 (2)
N5—C151.387 (2)C16—C171.384 (3)
N5—C121.452 (2)C16—H160.9300
N6—C181.457 (2)C17—C181.387 (3)
C2—C31.455 (3)C17—H170.9300
C2—H2A0.9700C18—C191.388 (3)
C2—H2B0.9700C19—C201.373 (2)
C3—C41.162 (4)C19—H190.9300
C1—N1—C10110.23 (16)C7—C8—C9123.72 (17)
C1—N1—H1121.9 (14)C7—C8—N3118.08 (17)
C10—N1—H1127.7 (14)C9—C8—N3118.18 (17)
C5—N2—C1109.67 (15)C10—C9—C8115.85 (17)
C5—N2—C2126.40 (16)C10—C9—H9122.1
C1—N2—C2123.92 (16)C8—C9—H9122.1
O3—N3—O2122.50 (18)C9—C10—N1131.69 (17)
O3—N3—C8118.46 (18)C9—C10—C5121.39 (16)
O2—N3—C8119.03 (18)N1—C10—C5106.92 (16)
C11—N4—C20109.80 (15)O4—C11—N4127.80 (18)
C11—N4—H4120.7 (13)O4—C11—N5125.54 (18)
C20—N4—H4129.3 (14)N4—C11—N5106.66 (16)
C11—N5—C15109.80 (15)N5—C12—C13112.49 (17)
C11—N5—C12123.13 (16)N5—C12—H12A109.1
C15—N5—C12126.98 (16)C13—C12—H12A109.1
O5—N6—O6122.84 (18)N5—C12—H12B109.1
O5—N6—C18118.59 (18)C13—C12—H12B109.1
O6—N6—C18118.57 (17)H12A—C12—H12B107.8
O1—C1—N1127.84 (18)C14—C13—C12177.7 (3)
O1—C1—N2125.59 (18)C13—C14—H141177 (2)
N1—C1—N2106.57 (16)C16—C15—N5131.48 (17)
N2—C2—C3111.72 (17)C16—C15—C20122.06 (16)
N2—C2—H2A109.3N5—C15—C20106.46 (15)
C3—C2—H2A109.3C15—C16—C17117.40 (17)
N2—C2—H2B109.3C15—C16—H16121.3
C3—C2—H2B109.3C17—C16—H16121.3
H2A—C2—H2B107.9C16—C17—C18119.75 (17)
C4—C3—C2177.4 (3)C16—C17—H17120.1
C3—C4—H41176 (2)C18—C17—H17120.1
C6—C5—N2131.73 (17)C19—C18—C17123.75 (17)
C6—C5—C10121.69 (17)C19—C18—N6118.16 (17)
N2—C5—C10106.58 (15)C17—C18—N6118.09 (17)
C5—C6—C7117.37 (17)C20—C19—C18115.76 (16)
C5—C6—H6121.3C20—C19—H19122.1
C7—C6—H6121.3C18—C19—H19122.1
C8—C7—C6119.97 (17)C19—C20—N4131.45 (16)
C8—C7—H7120.0C19—C20—C15121.28 (16)
C6—C7—H7120.0N4—C20—C15107.28 (15)
C10—N1—C1—O1−177.65 (19)C20—N4—C11—O4−179.86 (18)
C10—N1—C1—N21.7 (2)C20—N4—C11—N50.1 (2)
C5—N2—C1—O1177.68 (18)C15—N5—C11—O4−179.94 (18)
C2—N2—C1—O1−1.5 (3)C12—N5—C11—O43.2 (3)
C5—N2—C1—N1−1.7 (2)C15—N5—C11—N40.1 (2)
C2—N2—C1—N1179.04 (16)C12—N5—C11—N4−176.74 (17)
C5—N2—C2—C3−64.0 (2)C11—N5—C12—C13−120.6 (2)
C1—N2—C2—C3115.0 (2)C15—N5—C12—C1363.0 (3)
C1—N2—C5—C6−178.67 (19)C11—N5—C15—C16179.53 (19)
C2—N2—C5—C60.5 (3)C12—N5—C15—C16−3.7 (3)
C1—N2—C5—C101.1 (2)C11—N5—C15—C20−0.27 (19)
C2—N2—C5—C10−179.73 (17)C12—N5—C15—C20176.45 (17)
N2—C5—C6—C7−179.67 (18)N5—C15—C16—C17−179.89 (18)
C10—C5—C6—C70.6 (3)C20—C15—C16—C17−0.1 (3)
C5—C6—C7—C8−0.8 (3)C15—C16—C17—C18−0.2 (3)
C6—C7—C8—C90.4 (3)C16—C17—C18—C190.1 (3)
C6—C7—C8—N3179.11 (16)C16—C17—C18—N6−179.55 (17)
O3—N3—C8—C7172.97 (18)O5—N6—C18—C19175.1 (2)
O2—N3—C8—C7−8.4 (3)O6—N6—C18—C19−4.0 (3)
O3—N3—C8—C9−8.3 (3)O5—N6—C18—C17−5.2 (3)
O2—N3—C8—C9170.30 (18)O6—N6—C18—C17175.7 (2)
C7—C8—C9—C100.1 (3)C17—C18—C19—C200.2 (3)
N3—C8—C9—C10−178.55 (15)N6—C18—C19—C20179.91 (16)
C8—C9—C10—N1179.90 (18)C18—C19—C20—N4179.50 (18)
C8—C9—C10—C5−0.3 (2)C18—C19—C20—C15−0.5 (2)
C1—N1—C10—C9178.72 (19)C11—N4—C20—C19179.75 (18)
C1—N1—C10—C5−1.1 (2)C11—N4—C20—C15−0.23 (19)
C6—C5—C10—C9−0.1 (3)C16—C15—C20—C190.5 (3)
N2—C5—C10—C9−179.84 (15)N5—C15—C20—C19−179.68 (15)
C6—C5—C10—N1179.78 (16)C16—C15—C20—N4−179.52 (16)
N2—C5—C10—N10.01 (19)N5—C15—C20—N40.30 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.96 (2)1.81 (3)2.766 (2)173 (2)
N4—H4···O10.92 (2)1.91 (2)2.823 (2)172 (2)
C4—H41···O3i0.92 (4)2.39 (4)3.231 (4)153 (3)
C14—H141···O6ii0.88 (3)2.51 (3)3.383 (4)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O40.96 (2)1.81 (3)2.766 (2)173 (2)
N4—H4⋯O10.92 (2)1.91 (2)2.823 (2)172 (2)
C4—H41⋯O3i0.92 (4)2.39 (4)3.231 (4)153 (3)
C14—H141⋯O6ii0.88 (3)2.51 (3)3.383 (4)169 (3)

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Nitro-1-nonyl-1H-benzimidazol-2(3H)-one.

Authors:  Younes Ouzidan; Youssef Kandri Rodi; El Mokhtar Essassi; Lahcen El Ammari; Frank R Fronczek; Ramaiyer Venkatraman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-19

3.  5-Nitro-1-n-octyl-1H-benzimidazol-2(3H)-one.

Authors:  Younes Ouzidan; Y Kandri Rodi; Natalie Saffon; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-05

4.  1,3-Bis(prop-2-yn-yl)-1H-1,3-benzimid-azol-2(3H)-one.

Authors:  Younes Ouzidan; Youssef Kandri Rodi; Jerry P Jasinski; Raymond J Butcher; James A Golen; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
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