Literature DB >> 21754247

1,3-Bis[(1H-benzotriazol-1-yl)meth-yl]-2,3-dihydro-1H-benzimidazole.

Augusto Rivera, Mauricio Maldonado, José Luis Casas, Michal Dušek, Karla Fejfarová.   

Abstract

In the title compound, C(21)H(18)N(8), the two (benzotriazol-1-yl)methyl groups are located in an anti position with respect to the benzimidazoline moiety. The dihedral angles between the benzotriazole ring systems and the central benzimidazoline moiety are 57.03 (4) and 81.01 (3)°. The crystal packing is stabilized by two C-H⋯π inter-actions.

Entities:  

Year:  2011        PMID: 21754247      PMCID: PMC3099965          DOI: 10.1107/S1600536811010701

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For chemical background to the synthesis of the title compound, see: Katritzky et al. (1990 ▶); Rivera et al. (2004 ▶). For related structures, see: Wang et al. (2008 ▶); Kuhl et al. (2008 ▶); Rivera et al. (2010 ▶). For the tautomerism of benzotriazole, see: Elguero et al. (2000 ▶).

Experimental

Crystal data

C21H18N8 M = 382.4 Monoclinic, a = 9.0037 (2) Å b = 11.5733 (3) Å c = 18.0167 (4) Å β = 103.056 (2)° V = 1828.85 (8) Å3 Z = 4 Cu Kα radiation μ = 0.72 mm−1 T = 120 K 0.33 × 0.17 × 0.06 mm

Data collection

Oxford diffraction Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.139, T max = 1 27458 measured reflections 3269 independent reflections 2644 reflections with I > 3σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.091 S = 1.45 3269 reflections 262 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2007 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811010701/bt5499sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811010701/bt5499Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H18N8F(000) = 800
Mr = 382.4Dx = 1.389 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 11617 reflections
a = 9.0037 (2) Åθ = 3.8–67.1°
b = 11.5733 (3) ŵ = 0.72 mm1
c = 18.0167 (4) ÅT = 120 K
β = 103.056 (2)°Plate, colourless
V = 1828.85 (8) Å30.33 × 0.17 × 0.06 mm
Z = 4
Oxford diffraction Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector3269 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source2644 reflections with I > 3σ(I)
mirrorRint = 0.040
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 4.6°
Rotation method data acquisition using ω scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −13→13
Tmin = 0.139, Tmax = 1l = −21→21
27458 measured reflections
Refinement on F272 constraints
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.091Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2]
S = 1.45(Δ/σ)max = 0.007
3269 reflectionsΔρmax = 0.13 e Å3
262 parametersΔρmin = −0.13 e Å3
0 restraints
Experimental. CrysAlisPro, Oxford Diffraction (2009), Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
N10.53621 (12)0.20581 (9)0.71929 (6)0.0295 (4)
N20.28286 (12)0.23894 (9)0.69788 (7)0.0335 (4)
N30.05847 (12)0.28228 (9)0.74331 (6)0.0285 (3)
N40.00392 (13)0.39061 (10)0.72735 (7)0.0356 (4)
N5−0.04882 (14)0.42890 (10)0.78456 (7)0.0388 (4)
N60.69451 (12)0.08507 (9)0.65658 (6)0.0294 (3)
N70.78450 (13)0.13645 (10)0.61473 (7)0.0371 (4)
N80.78890 (14)0.07188 (11)0.55626 (7)0.0398 (4)
C10.39297 (15)0.14738 (12)0.72079 (8)0.0313 (4)
C20.34562 (15)0.32489 (11)0.66049 (7)0.0273 (4)
C30.50269 (15)0.30412 (11)0.67269 (7)0.0268 (4)
C40.59574 (15)0.37697 (11)0.64336 (7)0.0310 (4)
C50.52849 (16)0.47226 (11)0.60077 (8)0.0330 (4)
C60.37375 (16)0.49275 (12)0.58887 (8)0.0331 (4)
C70.27925 (16)0.41919 (11)0.61955 (8)0.0313 (4)
C80.12278 (15)0.21954 (11)0.68743 (8)0.0299 (4)
C90.04208 (14)0.24901 (11)0.81371 (7)0.0280 (4)
C10−0.02855 (15)0.34352 (12)0.83937 (8)0.0338 (4)
C11−0.07110 (17)0.33944 (14)0.90961 (9)0.0422 (5)
C12−0.03998 (18)0.23970 (15)0.95043 (9)0.0460 (6)
C130.03345 (18)0.14500 (14)0.92440 (8)0.0416 (5)
C140.07602 (15)0.14743 (12)0.85558 (8)0.0330 (4)
C150.67410 (15)0.14109 (12)0.72642 (8)0.0318 (4)
C160.63898 (14)−0.01708 (11)0.62348 (7)0.0279 (4)
C170.69984 (15)−0.02422 (12)0.55896 (8)0.0325 (4)
C180.66863 (18)−0.11979 (13)0.51014 (8)0.0402 (5)
C190.57612 (18)−0.20363 (13)0.52823 (8)0.0413 (5)
C200.51487 (17)−0.19509 (12)0.59347 (8)0.0390 (5)
C210.54493 (15)−0.10265 (11)0.64245 (8)0.0322 (4)
H1a0.374740.0871870.6831650.0376*
H1b0.3935740.1242730.7720350.0376*
H40.7033490.3629450.6518090.0372*
H50.5909480.5241850.5795040.0396*
H60.3302470.5583370.5591480.0397*
H70.1720330.4341080.612240.0376*
H8a0.1039770.1383480.6912260.0358*
H8b0.0717570.2428370.6369670.0358*
H11−0.1197540.4037490.9280180.0507*
H12−0.0688780.2335770.9984110.0552*
H130.0542670.0770250.9555560.0499*
H140.1258220.0832880.8376710.0396*
H15a0.680790.0842380.7658340.0381*
H15b0.7599320.1901380.746140.0381*
H180.71056−0.1260410.4658150.0483*
H190.552197−0.2699840.4957480.0496*
H200.450035−0.2558590.6040240.0468*
H210.503676−0.0972880.6870270.0386*
U11U22U33U12U13U23
N10.0281 (6)0.0275 (6)0.0335 (6)0.0015 (4)0.0082 (5)0.0025 (5)
N20.0286 (6)0.0297 (6)0.0445 (7)0.0023 (5)0.0133 (5)0.0086 (5)
N30.0274 (5)0.0258 (6)0.0323 (6)−0.0002 (4)0.0070 (5)−0.0002 (5)
N40.0364 (6)0.0281 (6)0.0420 (7)0.0039 (5)0.0082 (5)0.0003 (5)
N50.0383 (6)0.0353 (7)0.0424 (7)0.0048 (5)0.0085 (5)−0.0050 (5)
N60.0259 (5)0.0277 (6)0.0349 (6)−0.0002 (4)0.0073 (5)0.0008 (5)
N70.0297 (6)0.0363 (6)0.0483 (7)−0.0006 (5)0.0153 (5)0.0032 (5)
N80.0384 (7)0.0396 (7)0.0457 (7)0.0049 (5)0.0187 (6)0.0056 (6)
C10.0304 (7)0.0295 (7)0.0342 (7)0.0005 (5)0.0074 (6)0.0027 (6)
C20.0310 (7)0.0255 (6)0.0260 (6)−0.0034 (5)0.0077 (5)−0.0031 (5)
C30.0307 (7)0.0249 (6)0.0246 (6)−0.0009 (5)0.0060 (5)−0.0045 (5)
C40.0297 (7)0.0303 (7)0.0329 (7)−0.0054 (6)0.0069 (6)−0.0047 (6)
C50.0395 (8)0.0288 (7)0.0312 (7)−0.0093 (6)0.0091 (6)−0.0025 (5)
C60.0429 (8)0.0252 (7)0.0303 (7)−0.0023 (6)0.0063 (6)0.0007 (5)
C70.0314 (7)0.0291 (7)0.0325 (7)0.0002 (6)0.0050 (6)−0.0009 (5)
C80.0297 (7)0.0293 (7)0.0319 (7)−0.0022 (5)0.0098 (6)−0.0021 (5)
C90.0221 (6)0.0322 (7)0.0289 (7)−0.0054 (5)0.0040 (5)−0.0043 (5)
C100.0281 (7)0.0354 (8)0.0373 (8)−0.0036 (6)0.0060 (6)−0.0084 (6)
C110.0368 (8)0.0518 (10)0.0393 (8)−0.0049 (7)0.0110 (6)−0.0134 (7)
C120.0442 (9)0.0632 (11)0.0324 (8)−0.0140 (8)0.0127 (7)−0.0093 (7)
C130.0446 (8)0.0452 (9)0.0328 (7)−0.0131 (7)0.0043 (6)0.0017 (6)
C140.0315 (7)0.0322 (7)0.0337 (7)−0.0052 (6)0.0037 (6)−0.0016 (6)
C150.0285 (7)0.0337 (7)0.0309 (7)0.0008 (5)0.0020 (5)−0.0018 (6)
C160.0256 (6)0.0279 (7)0.0286 (6)0.0046 (5)0.0023 (5)0.0026 (5)
C170.0316 (7)0.0328 (7)0.0334 (7)0.0082 (6)0.0081 (6)0.0056 (6)
C180.0484 (9)0.0413 (8)0.0305 (7)0.0142 (7)0.0079 (6)0.0009 (6)
C190.0519 (9)0.0317 (8)0.0351 (8)0.0080 (7)−0.0010 (7)−0.0050 (6)
C200.0423 (8)0.0276 (7)0.0434 (9)0.0004 (6)0.0021 (7)0.0018 (6)
C210.0345 (7)0.0282 (7)0.0334 (7)0.0022 (6)0.0067 (6)0.0030 (6)
N1—C11.4619 (18)C6—H60.96
N1—C31.4057 (16)C7—H70.96
N1—C151.4307 (17)C8—H8a0.96
N2—C11.4461 (17)C8—H8b0.96
N2—C21.3908 (18)C9—C101.395 (2)
N2—C81.4286 (17)C9—C141.3931 (18)
N3—N41.3535 (15)C10—C111.403 (2)
N3—C81.4626 (19)C11—C121.363 (2)
N3—C91.3651 (18)C11—H110.96
N4—N51.3058 (19)C12—C131.414 (2)
N5—C101.3797 (19)C12—H120.96
N6—N71.3618 (18)C13—C141.378 (2)
N6—C151.4635 (18)C13—H130.96
N6—C161.3668 (16)C14—H140.96
N7—N81.2994 (18)C15—H15a0.96
N8—C171.3784 (19)C15—H15b0.96
C1—H1a0.96C16—C171.395 (2)
C1—H1b0.96C16—C211.3948 (19)
C2—C31.4020 (18)C17—C181.402 (2)
C2—C71.3759 (17)C18—C191.365 (2)
C3—C41.376 (2)C18—H180.96
C4—C51.4006 (18)C19—C201.410 (2)
C4—H40.96C19—H190.96
C5—C61.381 (2)C20—C211.3743 (19)
C5—H50.96C20—H200.96
C6—C71.402 (2)C21—H210.96
C1—N1—C3108.31 (10)N3—C8—H8b109.4707
C1—N1—C15120.50 (11)H8a—C8—H8b106.7384
C3—N1—C15122.84 (12)N3—C9—C10103.88 (11)
C1—N2—C2109.58 (11)N3—C9—C14133.21 (13)
C1—N2—C8121.91 (11)C10—C9—C14122.87 (13)
C2—N2—C8123.83 (10)N5—C10—C9108.70 (13)
N4—N3—C8119.65 (11)N5—C10—C11130.59 (14)
N4—N3—C9110.39 (11)C9—C10—C11120.67 (13)
C8—N3—C9129.96 (11)C10—C11—C12116.76 (15)
N3—N4—N5109.02 (11)C10—C11—H11121.6181
N4—N5—C10108.00 (12)C12—C11—H11121.6189
N7—N6—C15119.24 (10)C11—C12—C13122.14 (16)
N7—N6—C16109.93 (11)C11—C12—H12118.9315
C15—N6—C16130.82 (12)C13—C12—H12118.9322
N6—N7—N8109.19 (11)C12—C13—C14121.91 (14)
N7—N8—C17108.11 (13)C12—C13—H13119.0442
N1—C1—N2101.92 (10)C14—C13—H13119.044
N1—C1—H1a109.4711C9—C14—C13115.65 (13)
N1—C1—H1b109.4711C9—C14—H14122.176
N2—C1—H1a109.4717C13—C14—H14122.1781
N2—C1—H1b109.4706N1—C15—N6115.45 (10)
H1a—C1—H1b116.0962N1—C15—H15a109.4716
N2—C2—C3107.89 (10)N1—C15—H15b109.4715
N2—C2—C7130.71 (12)N6—C15—H15a109.4709
C3—C2—C7121.37 (13)N6—C15—H15b109.4707
N1—C3—C2107.78 (11)H15a—C15—H15b102.7515
N1—C3—C4131.17 (12)N6—C16—C17103.94 (12)
C2—C3—C4121.00 (11)N6—C16—C21133.61 (13)
C3—C4—C5117.88 (13)C17—C16—C21122.45 (12)
C3—C4—H4121.0592N8—C17—C16108.83 (12)
C5—C4—H4121.0603N8—C17—C18130.57 (14)
C4—C5—C6121.08 (13)C16—C17—C18120.59 (13)
C4—C5—H5119.4594C17—C18—C19117.23 (15)
C6—C5—H5119.4597C17—C18—H18121.3823
C5—C6—C7121.00 (12)C19—C18—H18121.3839
C5—C6—H6119.499C18—C19—C20121.59 (14)
C7—C6—H6119.4995C18—C19—H19119.2076
C2—C7—C6117.65 (13)C20—C19—H19119.2074
C2—C7—H7121.1743C19—C20—C21122.17 (14)
C6—C7—H7121.1739C19—C20—H20118.9165
N2—C8—N3112.07 (10)C21—C20—H20118.9176
N2—C8—H8a109.4717C16—C21—C20115.97 (14)
N2—C8—H8b109.4715C16—C21—H21122.0168
N3—C8—H8a109.4707C20—C21—H21122.0158
C3—N1—C1—N2−20.63 (13)N7—N8—C17—C16−0.40 (16)
C15—N1—C1—N2−169.70 (11)N7—N8—C17—C18−179.17 (15)
C1—N1—C3—C214.16 (14)N2—C2—C3—N1−1.19 (14)
C1—N1—C3—C4−168.50 (13)N2—C2—C3—C4−178.85 (12)
C15—N1—C3—C2162.35 (11)C7—C2—C3—N1176.99 (12)
C15—N1—C3—C4−20.3 (2)C7—C2—C3—C4−0.67 (19)
C1—N1—C15—N680.80 (15)N2—C2—C7—C6179.09 (13)
C3—N1—C15—N6−63.69 (16)C3—C2—C7—C61.39 (19)
C2—N2—C1—N120.13 (14)N1—C3—C4—C5−177.23 (13)
C8—N2—C1—N1176.70 (12)C2—C3—C4—C5−0.19 (19)
C1—N2—C2—C3−12.47 (14)C3—C4—C5—C60.28 (19)
C1—N2—C2—C7169.58 (14)C4—C5—C6—C70.5 (2)
C8—N2—C2—C3−168.51 (12)C5—C6—C7—C2−1.3 (2)
C8—N2—C2—C713.6 (2)N3—C9—C10—N5−0.99 (15)
C1—N2—C8—N3114.09 (13)N3—C9—C10—C11176.99 (13)
C2—N2—C8—N3−92.71 (15)C14—C9—C10—N5−178.84 (13)
C8—N3—N4—N5179.34 (11)C14—C9—C10—C11−0.9 (2)
C9—N3—N4—N5−0.58 (15)N3—C9—C14—C13−176.33 (14)
N4—N3—C8—N290.24 (14)C10—C9—C14—C130.8 (2)
C9—N3—C8—N2−89.85 (16)N5—C10—C11—C12177.47 (15)
N4—N3—C9—C100.95 (14)C9—C10—C11—C120.0 (2)
N4—N3—C9—C14178.48 (14)C10—C11—C12—C130.9 (2)
C8—N3—C9—C10−178.96 (13)C11—C12—C13—C14−0.9 (3)
C8—N3—C9—C14−1.4 (2)C12—C13—C14—C90.1 (2)
N3—N4—N5—C10−0.08 (16)N6—C16—C17—N80.44 (15)
N4—N5—C10—C90.69 (16)N6—C16—C17—C18179.36 (13)
N4—N5—C10—C11−177.02 (15)C21—C16—C17—N8−179.23 (12)
C15—N6—N7—N8178.98 (11)C21—C16—C17—C18−0.3 (2)
C16—N6—N7—N80.10 (15)N6—C16—C21—C20−179.76 (14)
N7—N6—C15—N199.09 (14)C17—C16—C21—C20−0.2 (2)
C16—N6—C15—N1−82.29 (17)N8—C17—C18—C19179.21 (15)
N7—N6—C16—C17−0.33 (14)C16—C17—C18—C190.6 (2)
N7—N6—C16—C21179.29 (14)C17—C18—C19—C20−0.3 (2)
C15—N6—C16—C17−179.05 (13)C18—C19—C20—C21−0.2 (2)
C15—N6—C16—C210.6 (2)C19—C20—C21—C160.5 (2)
N6—N7—N8—C170.19 (15)
Cg2 is the centroid of the N3–N5/C9/C10 ring and Cg4 is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
C15—H15B···Cg2i0.962.763.7131 (15)172
C19—H19···Cg4ii0.962.743.6277 (15)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the N3–N5/C9/C10 ring and Cg4 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C15—H15B⋯Cg2i0.962.763.7131 (15)172
C19—H19⋯Cg4ii0.962.743.6277 (15)154

Symmetry codes: (i) ; (ii) .

  4 in total

1.  1,1'-[Imidazolidine-1,3-diylbis(methyl-ene)]bis-(1H-benzotriazole).

Authors:  Augusto Rivera; Diego Quiroga; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

2.  1,1'-[(2,3,3a,4,5,6,7,7a-Octa-hydro-1H-1,3-benzimidazole-1,3-di-yl)bis-(methyl-ene)]bis-(1H-benzotriazole).

Authors:  Augusto Rivera; Dency José Pacheco; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

3.  1,1'-[(2-Phenyl-2,3-dihydro-1H-benz-imidazole-1,3-di-yl)bis-(methyl-ene)]bis-(1H-benzotriazole).

Authors:  Augusto Rivera; Hector Jairo Osorio; Jaime Ríos-Motta; Karla Fejfarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

4.  2,2'-[1,2-Phenyl-enebis(aza-nedi-yl)]di-aceto-nitrile.

Authors:  Augusto Rivera; Leonardo Jiménez-Cruz; Mauricio Maldonado; Monika Kučeráková; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-24
  4 in total

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