Literature DB >> 22346948

1,1'-[Imidazolidine-1,3-diylbis(methyl-ene)]bis-(1H-benzotriazole).

Augusto Rivera, Diego Quiroga, Jaime Ríos-Motta, Karla Fejfarová, Michal Dušek.   

Abstract

In the title compound, C(17)H(18)N(8), the imidazolidine ring adopts an envelope conformation with the substituents at the N atoms in trans positions with respect to the central ring. The dihedral angle between the two benzotriazole rings is 71.65 (10)°. In the crystal, non-classical C-H⋯N inter-actions link the mol-ecules into helical chains along the b axis. The crystal packing is further stabilized by weak C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22346948      PMCID: PMC3275003          DOI: 10.1107/S1600536812000232

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Rivera et al. (2011 ▶). For the synthesis of the title compound, see: Rivera et al. (2004 ▶); Katriztky et al. (1990 ▶). For ring conformations, see Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For the anomeric effect, see: Dabbagh et al. (2002 ▶); Selámbaron et al. (2001 ▶); Zefirov & Shekhtman (1971 ▶); Hendrickson (1961 ▶).

Experimental

Crystal data

C17H18N8 M = 334.4 Monoclinic, a = 11.8609 (6) Å b = 4.6429 (2) Å c = 14.4712 (8) Å β = 93.053 (4)° V = 795.78 (7) Å3 Z = 2 Cu Kα radiation μ = 0.74 mm−1 T = 120 K 0.43 × 0.18 × 0.10 mm

Data collection

Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.378, T max = 1 10081 measured reflections 1609 independent reflections 1541 reflections with I > 3σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.073 S = 1.52 1609 reflections 226 parameters H-atom parameters constrained Δρmax = 0.09 e Å−3 Δρmin = −0.11 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812000232/bt5768sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000232/bt5768Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000232/bt5768Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N8F(000) = 352
Mr = 334.4Dx = 1.395 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.5418 Å
Hall symbol: P 2ybCell parameters from 7090 reflections
a = 11.8609 (6) Åθ = 3.1–66.9°
b = 4.6429 (2) ŵ = 0.74 mm1
c = 14.4712 (8) ÅT = 120 K
β = 93.053 (4)°Prism, colourless
V = 795.78 (7) Å30.43 × 0.18 × 0.10 mm
Z = 2
Agilent Xcalibur diffractometer with an Atlas (Gemini ultra Cu) detector1609 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1541 reflections with I > 3σ(I)
mirrorRint = 0.030
Detector resolution: 10.3784 pixels mm-1θmax = 67.0°, θmin = 3.1°
Rotation method data acquisition using ω scansh = −14→14
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −5→5
Tmin = 0.378, Tmax = 1l = −17→16
10081 measured reflections
Refinement on F273 constraints
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.073Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
S = 1.52(Δ/σ)max = 0.005
1609 reflectionsΔρmax = 0.09 e Å3
226 parametersΔρmin = −0.11 e Å3
0 restraints
Experimental. CrysAlisPro (Agilent, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
N10.21591 (11)0.2699 (3)0.93068 (9)0.0235 (4)
N20.26794 (11)0.5272 (3)1.06164 (10)0.0238 (4)
N30.09989 (11)0.3594 (3)0.79499 (9)0.0235 (4)
N4−0.01384 (12)0.4004 (4)0.78915 (11)0.0290 (4)
N5−0.05795 (11)0.2425 (4)0.72197 (10)0.0298 (5)
N60.40908 (11)0.4060 (3)1.18741 (10)0.0239 (4)
N70.50606 (11)0.2991 (4)1.15561 (10)0.0280 (4)
N80.54874 (11)0.1110 (4)1.21481 (10)0.0279 (4)
C10.31519 (14)0.3661 (4)0.98560 (11)0.0264 (5)
C20.17294 (13)0.3532 (4)1.09029 (11)0.0248 (5)
C30.13569 (13)0.1890 (4)1.00110 (11)0.0239 (5)
C40.17205 (15)0.4928 (4)0.86759 (12)0.0263 (5)
C50.12961 (13)0.1659 (4)0.73030 (11)0.0215 (5)
C60.02769 (13)0.0916 (4)0.68333 (12)0.0253 (5)
C70.02635 (16)−0.1107 (4)0.61123 (12)0.0314 (5)
C80.12773 (17)−0.2263 (5)0.58977 (12)0.0354 (6)
C90.23000 (15)−0.1486 (5)0.63788 (12)0.0308 (5)
C100.23362 (14)0.0484 (4)0.70895 (11)0.0251 (5)
C110.34550 (15)0.6304 (4)1.13345 (12)0.0286 (5)
C120.38817 (13)0.2843 (4)1.27059 (11)0.0228 (5)
C130.47863 (13)0.0943 (4)1.28781 (12)0.0232 (5)
C140.48715 (14)−0.0715 (4)1.36880 (12)0.0270 (5)
C150.40331 (15)−0.0378 (4)1.42939 (13)0.0311 (5)
C160.31195 (15)0.1530 (5)1.41080 (13)0.0329 (6)
C170.30163 (14)0.3172 (4)1.33186 (12)0.0293 (5)
H1a0.3586320.4938530.9493140.0316*
H1b0.3558740.2018651.0100350.0316*
H2a0.1130220.4778041.1076350.0298*
H2b0.1991610.218391.1369220.0298*
H3a0.140331−0.0145171.0123420.0287*
H3b0.0609180.248440.9807470.0287*
H4a0.1287740.6286580.9010230.0316*
H4b0.2337580.589130.8403540.0316*
H7−0.042768−0.1655570.5783710.0376*
H80.129465−0.3644080.5405090.0424*
H90.299061−0.2360790.6204380.037*
H100.3029810.1018220.7417350.0302*
H11a0.306160.751461.1748110.0343*
H11b0.3976070.7624461.1076640.0343*
H140.54877−0.20241.3811950.0325*
H150.406631−0.1464381.4859210.0373*
H160.2548610.16831.455140.0395*
H170.2392680.4458441.3195320.0351*
U11U22U33U12U13U23
N10.0240 (6)0.0259 (8)0.0205 (7)−0.0003 (6)−0.0004 (5)0.0012 (6)
N20.0261 (7)0.0225 (7)0.0223 (7)−0.0021 (6)−0.0037 (5)0.0009 (6)
N30.0221 (6)0.0253 (7)0.0229 (7)0.0011 (6)−0.0008 (5)0.0020 (6)
N40.0230 (7)0.0315 (8)0.0326 (8)0.0042 (7)0.0022 (6)0.0053 (7)
N50.0218 (7)0.0346 (9)0.0325 (8)−0.0010 (6)−0.0027 (5)0.0075 (7)
N60.0235 (6)0.0241 (8)0.0235 (7)−0.0008 (6)−0.0032 (5)−0.0013 (6)
N70.0227 (6)0.0338 (9)0.0269 (7)−0.0032 (6)−0.0025 (5)−0.0021 (7)
N80.0221 (7)0.0336 (9)0.0275 (7)0.0006 (6)−0.0023 (5)−0.0019 (7)
C10.0233 (7)0.0334 (10)0.0224 (8)−0.0017 (8)0.0009 (6)0.0024 (8)
C20.0212 (7)0.0296 (9)0.0236 (8)0.0009 (7)0.0008 (6)−0.0008 (7)
C30.0233 (8)0.0239 (9)0.0243 (8)−0.0025 (7)−0.0007 (6)0.0003 (7)
C40.0323 (8)0.0244 (9)0.0219 (8)−0.0026 (8)−0.0032 (6)−0.0010 (7)
C50.0234 (7)0.0221 (9)0.0187 (7)−0.0006 (7)−0.0008 (6)0.0035 (7)
C60.0240 (8)0.0260 (9)0.0255 (8)−0.0022 (7)−0.0033 (6)0.0080 (7)
C70.0360 (9)0.0301 (10)0.0267 (9)−0.0058 (8)−0.0098 (7)0.0031 (8)
C80.0514 (11)0.0314 (10)0.0228 (8)−0.0009 (9)−0.0021 (7)−0.0015 (8)
C90.0332 (8)0.0330 (11)0.0264 (8)0.0063 (8)0.0038 (6)0.0011 (8)
C100.0229 (8)0.0291 (10)0.0235 (8)−0.0004 (7)0.0009 (6)0.0029 (7)
C110.0348 (9)0.0208 (9)0.0288 (9)−0.0039 (8)−0.0109 (7)0.0012 (8)
C120.0224 (7)0.0225 (9)0.0228 (8)−0.0029 (7)−0.0062 (6)−0.0028 (7)
C130.0193 (7)0.0246 (9)0.0253 (8)−0.0022 (7)−0.0032 (6)−0.0039 (7)
C140.0262 (8)0.0241 (9)0.0299 (9)0.0014 (7)−0.0066 (6)0.0000 (7)
C150.0322 (9)0.0317 (11)0.0289 (9)−0.0030 (8)−0.0028 (7)0.0043 (8)
C160.0292 (8)0.0394 (11)0.0303 (9)−0.0009 (8)0.0039 (7)−0.0004 (9)
C170.0238 (8)0.0336 (11)0.0302 (9)0.0041 (8)−0.0013 (6)−0.0026 (8)
N1—C11.455 (2)C4—H4b0.96
N1—C31.479 (2)C5—C61.398 (2)
N1—C41.458 (2)C5—C101.398 (2)
N2—C11.466 (2)C6—C71.403 (3)
N2—C21.464 (2)C7—C81.368 (3)
N2—C111.433 (2)C7—H70.96
N3—N41.3604 (19)C8—C91.413 (3)
N3—C41.458 (2)C8—H80.96
N3—C51.357 (2)C9—C101.376 (3)
N4—N51.305 (2)C9—H90.96
N5—C61.377 (2)C10—H100.96
N6—N71.355 (2)C11—H11a0.96
N6—C111.484 (2)C11—H11b0.96
N6—C121.364 (2)C12—C131.401 (2)
N7—N81.307 (2)C12—C171.400 (2)
N8—C131.381 (2)C13—C141.402 (2)
C1—H1a0.96C14—C151.369 (3)
C1—H1b0.96C14—H140.96
C2—C31.543 (2)C15—C161.414 (3)
C2—H2a0.96C15—H150.96
C2—H2b0.96C16—C171.373 (3)
C3—H3a0.96C16—H160.96
C3—H3b0.96C17—H170.96
C4—H4a0.96
C1—N1—C3103.48 (12)N3—C5—C10132.45 (15)
C1—N1—C4112.04 (14)C6—C5—C10123.13 (15)
C3—N1—C4112.98 (13)N5—C6—C5108.33 (15)
C1—N2—C2105.19 (14)N5—C6—C7131.54 (15)
C1—N2—C11117.30 (13)C5—C6—C7120.12 (16)
C2—N2—C11116.94 (13)C6—C7—C8117.14 (16)
N4—N3—C4121.83 (14)C6—C7—H7121.4291
N4—N3—C5110.05 (13)C8—C7—H7121.4287
C4—N3—C5127.90 (14)C7—C8—C9122.02 (18)
N3—N4—N5108.94 (14)C7—C8—H8118.9882
N4—N5—C6108.26 (13)C9—C8—H8118.9897
N7—N6—C11119.68 (14)C8—C9—C10122.01 (17)
N7—N6—C12110.21 (14)C8—C9—H9118.9967
C11—N6—C12130.08 (14)C10—C9—H9118.9971
N6—N7—N8109.17 (13)C5—C10—C9115.58 (15)
N7—N8—C13108.11 (14)C5—C10—H10122.2124
N1—C1—N2103.65 (13)C9—C10—H10122.2126
N1—C1—H1a109.4707N2—C11—N6115.81 (15)
N1—C1—H1b109.4711N2—C11—H11a109.4718
N2—C1—H1a109.4712N2—C11—H11b109.4704
N2—C1—H1b109.4715N6—C11—H11a109.4709
H1a—C1—H1b114.7236N6—C11—H11b109.4712
N2—C2—C3103.06 (13)H11a—C11—H11b102.2888
N2—C2—H2a109.4714N6—C12—C13104.13 (14)
N2—C2—H2b109.4715N6—C12—C17133.44 (16)
C3—C2—H2a109.4717C13—C12—C17122.43 (16)
C3—C2—H2b109.4711N8—C13—C12108.38 (15)
H2a—C2—H2b115.2N8—C13—C14130.61 (16)
N1—C3—C2106.55 (13)C12—C13—C14121.01 (15)
N1—C3—H3a109.4715C13—C14—C15116.76 (16)
N1—C3—H3b109.4715C13—C14—H14121.6205
C2—C3—H3a109.4712C15—C14—H14121.6212
C2—C3—H3b109.4712C14—C15—C16121.66 (17)
H3a—C3—H3b112.2427C14—C15—H15119.1684
N1—C4—N3109.01 (15)C16—C15—H15119.1674
N1—C4—H4a109.4712C15—C16—C17122.64 (17)
N1—C4—H4b109.4703C15—C16—H16118.6785
N3—C4—H4a109.4717C17—C16—H16118.6776
N3—C4—H4b109.4721C12—C17—C16115.49 (16)
H4a—C4—H4b109.9289C12—C17—H17122.2546
N3—C5—C6104.42 (14)C16—C17—H17122.2552
N2—C2—C3—N13.05 (17)
Cg3 is the centroid of the N6/N7/N8/C13/C12 aromatic ring.
D—H···AD—HH···AD···AD—H···A
C17—H17···N5i0.962.603.552 (2)173
C11—H11b···Cg3ii0.962.863.394 (2)116
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the N6/N7/N8/C13/C12 aromatic ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17⋯N5i0.962.603.552 (2)173
C11—H11bCg3ii0.962.863.394 (2)116

Symmetry codes: (i) ; (ii) .

  3 in total

1.  Contribution of the anomeric effect to the solution and crystal structure of [1S,2S,6S,7s]-1,6-diaza-4,9-dioxa-2,7-dimethoxycarbonylbicyclo[4.4.1]undecane, a condensation product of L-serine methyl ester with formaldehyde.

Authors:  J Sélambarom; S Monge; F Carré; A Fruchier; J P Roque; A A Pavia
Journal:  Carbohydr Res       Date:  2001-01-15       Impact factor: 2.104

2.  1,3-Bis[(1H-benzotriazol-1-yl)meth-yl]-2,3-dihydro-1H-benzimidazole.

Authors:  Augusto Rivera; Mauricio Maldonado; José Luis Casas; Michal Dušek; Karla Fejfarová
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26

3.  1,1'-[(2,3,3a,4,5,6,7,7a-Octa-hydro-1H-1,3-benzimidazole-1,3-di-yl)bis-(methyl-ene)]bis-(1H-benzotriazole).

Authors:  Augusto Rivera; Dency José Pacheco; Jaime Ríos-Motta; Michaela Pojarová; Michal Dušek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.