Literature DB >> 23476247

2,2'-[1,2-Phenyl-enebis(aza-nedi-yl)]di-aceto-nitrile.

Augusto Rivera1, Leonardo Jiménez-Cruz, Mauricio Maldonado, Monika Kučeráková, Michal Dušek.   

Abstract

The title compound, C10H10N4, shows chemical but not crystallographic C2 symmetry. The two cyano-methyl groups are located in an anti position with respect to the aromatic ring. In the crystal, mol-ecules form parallel ladder-like tapes linked through two N-H⋯N hydrogen bonds. Further weak intra-molecular N-H⋯N hydrogen bonding is responsible for the elongation of one of the Caromatic-N bonds.

Entities:  

Year:  2012        PMID: 23476247      PMCID: PMC3589011          DOI: 10.1107/S1600536812047538

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the title compound, see: Rivera et al. (2010 ▶). For related structures, see: Rivera et al. (2010 ▶, 2011 ▶); Silversides et al. (2006 ▶).

Experimental

Crystal data

C10H10N4 M = 186.2 Orthorhombic, a = 7.6404 (3) Å b = 15.1703 (7) Å c = 15.9168 (7) Å V = 1844.87 (14) Å3 Z = 8 Cu Kα radiation μ = 0.69 mm−1 T = 120 K 0.17 × 0.15 × 0.10 mm

Data collection

Agilent Xcalibur (Atlas, Gemini ultra) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.68, T max = 1 9893 measured reflections 1641 independent reflections 1359 reflections with I > 3σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.104 S = 1.55 1641 reflections 133 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: JANA2006 (Petříček et al., 2006 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: JANA2006. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812047538/bt6866sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812047538/bt6866Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812047538/bt6866Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N4Dx = 1.341 Mg m3
Mr = 186.2Melting point: 399 K
Orthorhombic, PbcaCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ac 2abCell parameters from 4237 reflections
a = 7.6404 (3) Åθ = 4.0–67.0°
b = 15.1703 (7) ŵ = 0.69 mm1
c = 15.9168 (7) ÅT = 120 K
V = 1844.87 (14) Å3Polygon shape, white
Z = 80.17 × 0.15 × 0.10 mm
F(000) = 784
Agilent Xcalibur (Atlas, Gemini ultra) diffractometer1641 independent reflections
Radiation source: Enhance Ultra (Cu) X-ray Source1359 reflections with I > 3σ(I)
Mirror monochromatorRint = 0.061
Detector resolution: 10.3784 pixels mm-1θmax = 67.2°, θmin = 5.6°
ω scansh = −7→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)k = −18→18
Tmin = 0.68, Tmax = 1l = −18→16
9893 measured reflections
Refinement on F234 constraints
R[F2 > 2σ(F2)] = 0.039H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.104Weighting scheme based on measured s.u.'s w = 1/(σ2(I) + 0.0016I2)
S = 1.55(Δ/σ)max = 0.005
1641 reflectionsΔρmax = 0.16 e Å3
133 parametersΔρmin = −0.20 e Å3
0 restraints
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement.The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program.
xyzUiso*/Ueq
N10.67776 (14)0.46314 (7)0.09105 (8)0.0197 (3)
N20.59009 (13)0.37473 (8)−0.05397 (8)0.0182 (3)
N30.75959 (16)0.31452 (9)0.25065 (9)0.0316 (4)
N40.68740 (17)0.42625 (9)−0.25896 (9)0.0314 (4)
C10.67383 (17)0.35295 (9)0.20428 (10)0.0228 (4)
C20.62292 (17)0.38628 (9)−0.20642 (10)0.0227 (4)
C30.81190 (16)0.41747 (8)0.04529 (9)0.0179 (4)
C40.76583 (16)0.37282 (8)−0.02878 (9)0.0176 (4)
C50.54231 (16)0.33892 (9)−0.13496 (9)0.0200 (4)
C60.89448 (16)0.32671 (9)−0.07229 (10)0.0203 (4)
C70.57084 (17)0.40361 (9)0.14220 (10)0.0215 (4)
C81.11225 (17)0.37219 (9)0.02841 (11)0.0248 (4)
C90.98466 (17)0.41713 (9)0.07282 (10)0.0224 (4)
C101.06689 (17)0.32645 (10)−0.04320 (10)0.0238 (4)
H1c50.4172650.339719−0.1408230.024*
H2c50.574310.277778−0.1372920.024*
H1c60.8646390.294979−0.1224650.0244*
H1c70.5087880.3636090.1061880.0258*
H2c70.4819850.4368620.170730.0258*
H1c81.231540.3728560.0473410.0298*
H1c91.0156810.448370.1231170.0268*
H1c101.1547160.294105−0.0733690.0286*
H10.732 (2)0.5050 (12)0.1255 (12)0.0237*
H20.536 (2)0.4245 (12)−0.0403 (12)0.0219*
U11U22U33U12U13U23
N10.0140 (5)0.0231 (6)0.0221 (7)0.0001 (4)−0.0013 (5)−0.0013 (5)
N20.0087 (5)0.0257 (6)0.0202 (7)0.0023 (4)0.0000 (5)−0.0013 (5)
N30.0229 (6)0.0399 (7)0.0319 (8)−0.0047 (6)−0.0020 (6)0.0091 (6)
N40.0267 (6)0.0389 (7)0.0287 (8)0.0053 (6)0.0054 (6)0.0065 (6)
C10.0167 (7)0.0287 (7)0.0231 (8)−0.0035 (6)0.0041 (6)−0.0004 (6)
C20.0154 (6)0.0286 (7)0.0241 (9)0.0052 (6)−0.0007 (6)−0.0013 (6)
C30.0117 (6)0.0210 (6)0.0210 (8)−0.0002 (5)0.0014 (5)0.0041 (5)
C40.0101 (6)0.0217 (6)0.0211 (8)−0.0006 (5)0.0001 (5)0.0045 (5)
C50.0124 (6)0.0268 (7)0.0208 (8)−0.0011 (5)−0.0006 (6)0.0008 (5)
C60.0131 (6)0.0249 (7)0.0229 (8)0.0011 (5)0.0019 (6)0.0012 (6)
C70.0137 (6)0.0285 (7)0.0223 (8)0.0013 (5)0.0007 (6)−0.0007 (6)
C80.0094 (6)0.0300 (7)0.0350 (9)−0.0019 (5)−0.0030 (6)0.0081 (6)
C90.0153 (6)0.0262 (7)0.0256 (9)−0.0038 (5)−0.0042 (6)0.0051 (6)
C100.0107 (6)0.0284 (7)0.0324 (9)0.0028 (5)0.0043 (6)0.0064 (6)
N1—C31.4357 (17)C4—C61.3911 (19)
N1—C71.4648 (18)C5—H1c50.96
N1—H10.935 (18)C5—H2c50.96
N2—C41.4016 (16)C6—C101.3963 (18)
N2—C51.4457 (19)C6—H1c60.96
N2—H20.889 (18)C7—H1c70.96
N3—C11.146 (2)C7—H2c70.96
N4—C21.144 (2)C8—C91.384 (2)
C1—C71.479 (2)C8—C101.379 (2)
C2—C51.480 (2)C8—H1c80.96
C3—C41.404 (2)C9—H1c90.96
C3—C91.3908 (18)C10—H1c100.96
C3—N1—C7112.49 (10)H1c5—C5—H2c5105.18
C3—N1—H1108.1 (10)C4—C6—C10120.20 (14)
C7—N1—H1109.8 (11)C4—C6—H1c6119.9
C4—N2—C5119.29 (11)C10—C6—H1c6119.9
C4—N2—H2113.2 (11)N1—C7—C1113.27 (11)
C5—N2—H2114.8 (12)N1—C7—H1c7109.47
N3—C1—C7177.27 (15)N1—C7—H2c7109.47
N4—C2—C5176.55 (16)C1—C7—H1c7109.47
N1—C3—C4118.67 (11)C1—C7—H2c7109.47
N1—C3—C9121.29 (13)H1c7—C7—H2c7105.38
C4—C3—C9120.04 (12)C9—C8—C10119.55 (13)
N2—C4—C3118.05 (12)C9—C8—H1c8120.22
N2—C4—C6123.02 (13)C10—C8—H1c8120.22
C3—C4—C6118.90 (12)C3—C9—C8120.63 (14)
N2—C5—C2113.45 (11)C3—C9—H1c9119.69
N2—C5—H1c5109.47C8—C9—H1c9119.69
N2—C5—H2c5109.47C6—C10—C8120.65 (13)
C2—C5—H1c5109.47C6—C10—H1c10119.67
C2—C5—H2c5109.47C8—C10—H1c10119.67
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.935 (18)2.202 (19)3.0946 (19)159.2 (16)
N2—H2···N10.889 (18)2.427 (18)2.7524 (18)102.0 (13)
N2—H2···N1ii0.889 (18)2.494 (17)3.2536 (16)143.8 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯N4i 0.935 (18)2.202 (19)3.0946 (19)159.2 (16)
N2—H2⋯N10.889 (18)2.427 (18)2.7524 (18)102.0 (13)
N2—H2⋯N1ii 0.889 (18)2.494 (17)3.2536 (16)143.8 (15)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  1,3-Bis[(1H-benzotriazol-1-yl)meth-yl]-2,3-dihydro-1H-benzimidazole.

Authors:  Augusto Rivera; Mauricio Maldonado; José Luis Casas; Michal Dušek; Karla Fejfarová
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-26
  1 in total

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