Literature DB >> 22220042

N,N'-Dicyclo-hexyl-N''-(3-fluoro-benzo-yl)-N,N'-dimethyl-phospho-ric triamide.

Mehrdad Pourayoubi, Samad Shoghpour, Giuseppe Bruno, Hadi Amiri Rudbari.   

Abstract

In the title compound, C(21)H(33)FN(3)O(2)P, the P atom has a distorted tetra-hedral environment and the N atoms display geometries consistent with a model of sp(2) hybridization (with bond-angle sums for the tertiary N atoms of 357.8 and 358.7°). The phosphoryl and carbonyl groups are anti with respect to each other. In the crystal, inversion dimers linked by pairs of N-H⋯O hydrogen bonds generate R(2) (2)(8) loops.

Entities:  

Year:  2011        PMID: 22220042      PMCID: PMC3247424          DOI: 10.1107/S1600536811043017

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the coordination properties of carbacyl­amido­phosphates, see: Pourayoubi et al. (2011b ▶); Gholivand et al. (2010 ▶); Znovjyak et al. (2009 ▶); Trush et al. (2005 ▶); Gubina et al. (2002 ▶). For related structures, see: Pourayoubi et al. (2011a ▶); Pourayoubi & Saneei (2011 ▶). For the syn orientation of the P(=O) group and NH unit in the C(O)NHP(O) skeleton for most known carbacyl­amido­phosphates, see: Toghraee et al. (2011 ▶). For a procedure to synthesise the starting phospho­rus–chlorine compound, see: Pourayoubi et al. (2011c ▶). For graph-set notation of hydrogen bonds, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C21H33FN3O2P M = 409.47 Monoclinic, a = 22.6634 (8) Å b = 12.9587 (5) Å c = 17.6627 (7) Å β = 119.061 (1)° V = 4534.3 (3) Å3 Z = 8 Mo Kα radiation μ = 0.15 mm−1 T = 296 K 0.32 × 0.28 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.658, T max = 0.746 20958 measured reflections 4228 independent reflections 3254 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.157 S = 1.02 4228 reflections 257 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.93 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX (Dolomanov et al., 2003 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811043017/qm2034sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811043017/qm2034Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H33FN3O2PF(000) = 1760
Mr = 409.47Dx = 1.200 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 8133 reflections
a = 22.6634 (8) Åθ = 2.4–27.0°
b = 12.9587 (5) ŵ = 0.15 mm1
c = 17.6627 (7) ÅT = 296 K
β = 119.061 (1)°Cubic, colourless
V = 4534.3 (3) Å30.32 × 0.28 × 0.16 mm
Z = 8
Bruker APEXII CCD diffractometer4228 independent reflections
Radiation source: fine-focus sealed tube3254 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.5°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −27→27
Tmin = 0.658, Tmax = 0.746k = −15→15
20958 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.157H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0936P)2 + 3.0653P] where P = (Fo2 + 2Fc2)/3
4228 reflections(Δ/σ)max < 0.001
257 parametersΔρmax = 0.93 e Å3
1 restraintΔρmin = −0.29 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.19691 (2)0.87686 (4)0.02588 (3)0.03552 (19)
O20.30019 (9)0.98806 (14)0.18782 (12)0.0637 (5)
F10.46037 (14)0.6077 (2)0.31270 (17)0.1416 (10)
O10.16844 (7)0.78142 (11)−0.02507 (9)0.0426 (4)
N10.27588 (8)0.84697 (15)0.10211 (11)0.0370 (4)
C10.31644 (10)0.90341 (18)0.17448 (13)0.0417 (5)
C30.15054 (14)1.02308 (19)0.0955 (2)0.0618 (7)
H3A0.17101.06690.07090.093*
H3B0.17511.02820.15750.093*
H3C0.10471.04430.07490.093*
N20.20318 (9)0.97566 (15)−0.02662 (12)0.0479 (5)
C190.0611 (3)0.7585 (4)0.2030 (4)0.135 (2)
H19A0.05820.82000.23230.162*
H19B0.04280.70120.22040.162*
C200.0200 (2)0.7734 (4)0.1057 (4)0.1268 (18)
H20A−0.02610.79030.09050.152*
H20B0.01930.70940.07690.152*
C210.04874 (15)0.8595 (3)0.0735 (2)0.0828 (10)
H21A0.02310.86370.01080.099*
H21B0.04500.92520.09710.099*
C160.12210 (11)0.83718 (19)0.10158 (15)0.0477 (5)
H160.12350.77130.07520.057*
N30.15171 (9)0.91587 (14)0.06955 (12)0.0429 (4)
C40.38187 (11)0.8550 (2)0.23687 (13)0.0458 (6)
C50.39071 (12)0.7492 (2)0.24479 (15)0.0563 (6)
H50.35600.70440.20990.068*
C60.45265 (15)0.7122 (3)0.30609 (18)0.0740 (9)
C70.50556 (14)0.7743 (4)0.35762 (17)0.0865 (12)
H70.54700.74660.39750.104*
C180.1330 (3)0.7373 (3)0.2291 (3)0.1109 (15)
H18A0.13620.67230.20410.133*
H18B0.15880.73110.29170.133*
C170.16264 (17)0.8231 (3)0.19916 (18)0.0774 (9)
H17A0.16260.88710.22770.093*
H17B0.20900.80640.21540.093*
C100.26677 (11)1.00986 (18)−0.02259 (15)0.0462 (5)
H100.30350.97810.02930.055*
C150.27532 (14)0.9741 (2)−0.09852 (16)0.0599 (7)
H15A0.27260.8994−0.10220.072*
H15B0.23901.0019−0.15180.072*
C140.34258 (17)1.0089 (3)−0.0885 (2)0.0776 (9)
H14A0.34540.9893−0.13970.093*
H14B0.37880.9743−0.03910.093*
C130.35163 (19)1.1247 (3)−0.0759 (2)0.0881 (10)
H13A0.39611.1439−0.06640.106*
H13B0.31831.1595−0.12770.106*
C120.34381 (19)1.1582 (3)0.0008 (3)0.0898 (10)
H12A0.34801.23260.00660.108*
H12B0.37961.12780.05320.108*
C110.27582 (17)1.1256 (2)−0.0098 (2)0.0723 (8)
H11A0.27291.14540.04120.087*
H11B0.24001.1606−0.05940.087*
C20.13971 (13)1.0138 (2)−0.09931 (19)0.0692 (8)
H2A0.10220.9864−0.09480.104*
H2B0.13670.9921−0.15300.104*
H2C0.13891.0878−0.09750.104*
C90.43442 (12)0.9204 (3)0.28957 (16)0.0652 (7)
H90.42840.99150.28510.078*
C80.49597 (15)0.8784 (4)0.34893 (19)0.0887 (12)
H80.53150.92210.38360.106*
H10.2925 (11)0.8035 (17)0.0877 (14)0.038 (6)*
U11U22U33U12U13U23
P10.0267 (3)0.0428 (3)0.0322 (3)0.0018 (2)0.0104 (2)−0.0015 (2)
O20.0569 (11)0.0588 (11)0.0590 (11)0.0018 (8)0.0153 (9)−0.0221 (8)
F10.117 (2)0.160 (2)0.1197 (19)0.0660 (17)0.0356 (16)0.0554 (17)
O10.0301 (7)0.0530 (9)0.0395 (8)−0.0025 (6)0.0128 (6)−0.0097 (7)
N10.0297 (9)0.0432 (10)0.0319 (9)0.0053 (7)0.0100 (7)−0.0046 (7)
C10.0344 (11)0.0534 (14)0.0345 (11)−0.0035 (9)0.0145 (9)−0.0065 (9)
C30.0623 (16)0.0495 (15)0.0805 (19)0.0079 (12)0.0401 (15)−0.0068 (13)
N20.0341 (10)0.0566 (12)0.0448 (10)0.0024 (8)0.0127 (8)0.0117 (9)
C190.197 (6)0.116 (3)0.183 (5)−0.055 (3)0.164 (5)−0.036 (3)
C200.098 (3)0.134 (4)0.195 (5)−0.058 (3)0.108 (4)−0.058 (4)
C210.0469 (15)0.108 (2)0.099 (2)−0.0154 (15)0.0406 (16)−0.0275 (19)
C160.0438 (12)0.0544 (14)0.0504 (13)−0.0089 (10)0.0272 (11)−0.0132 (11)
N30.0382 (10)0.0433 (10)0.0495 (10)0.0031 (8)0.0231 (8)−0.0041 (8)
C40.0318 (11)0.0755 (17)0.0283 (10)−0.0034 (10)0.0133 (9)−0.0064 (10)
C50.0392 (13)0.0812 (19)0.0388 (12)0.0100 (12)0.0113 (10)0.0077 (12)
C60.0586 (17)0.106 (2)0.0518 (15)0.0363 (17)0.0225 (14)0.0271 (16)
C70.0364 (15)0.173 (4)0.0375 (14)0.0246 (19)0.0079 (12)0.0137 (19)
C180.168 (5)0.103 (3)0.096 (3)−0.021 (3)0.090 (3)0.008 (2)
C170.080 (2)0.096 (2)0.0561 (17)−0.0145 (17)0.0327 (16)0.0047 (16)
C100.0408 (12)0.0554 (14)0.0414 (12)−0.0026 (10)0.0192 (10)0.0040 (10)
C150.0671 (17)0.0661 (17)0.0508 (14)−0.0006 (13)0.0321 (13)−0.0005 (12)
C140.081 (2)0.104 (2)0.0696 (19)−0.0008 (18)0.0532 (18)0.0014 (17)
C130.081 (2)0.109 (3)0.092 (2)−0.0239 (19)0.055 (2)0.0053 (19)
C120.087 (2)0.085 (2)0.116 (3)−0.0347 (19)0.064 (2)−0.021 (2)
C110.077 (2)0.0608 (17)0.095 (2)−0.0165 (14)0.0536 (18)−0.0173 (15)
C20.0450 (14)0.0756 (19)0.0676 (17)0.0094 (13)0.0120 (13)0.0298 (14)
C90.0389 (13)0.104 (2)0.0453 (14)−0.0153 (13)0.0144 (11)−0.0201 (14)
C80.0348 (14)0.173 (4)0.0450 (16)−0.0165 (19)0.0090 (12)−0.020 (2)
P1—O11.4803 (15)C6—C71.362 (5)
P1—N21.6271 (19)C7—C81.362 (5)
P1—N31.6333 (17)C7—H70.9300
P1—N11.6808 (17)C18—C171.521 (4)
O2—C11.216 (3)C18—H18A0.9700
F1—C61.363 (4)C18—H18B0.9700
N1—C11.368 (3)C17—H17A0.9700
N1—H10.78 (2)C17—H17B0.9700
C1—C41.490 (3)C10—C111.515 (3)
C3—N31.467 (3)C10—C151.518 (3)
C3—H3A0.9600C10—H100.9800
C3—H3B0.9600C15—C141.515 (4)
C3—H3C0.9600C15—H15A0.9700
N2—C21.472 (3)C15—H15B0.9700
N2—C101.476 (3)C14—C131.516 (4)
C19—C181.487 (6)C14—H14A0.9700
C19—C201.518 (7)C14—H14B0.9700
C19—H19A0.9700C13—C121.513 (5)
C19—H19B0.9700C13—H13A0.9700
C20—C211.533 (5)C13—H13B0.9700
C20—H20A0.9700C12—C111.519 (4)
C20—H20B0.9700C12—H12A0.9700
C21—C161.514 (4)C12—H12B0.9700
C21—H21A0.9700C11—H11A0.9700
C21—H21B0.9700C11—H11B0.9700
C16—N31.476 (3)C2—H2A0.9600
C16—C171.520 (4)C2—H2B0.9600
C16—H160.9800C2—H2C0.9600
C4—C51.383 (4)C9—C81.386 (4)
C4—C91.388 (3)C9—H90.9300
C5—C61.377 (3)C8—H80.9300
C5—H50.9300
O1—P1—N2116.35 (10)C19—C18—C17111.1 (4)
O1—P1—N3110.95 (9)C19—C18—H18A109.4
N2—P1—N3105.90 (10)C17—C18—H18A109.4
O1—P1—N1105.93 (9)C19—C18—H18B109.4
N2—P1—N1106.50 (9)C17—C18—H18B109.4
N3—P1—N1111.17 (9)H18A—C18—H18B108.0
C1—N1—P1126.58 (16)C16—C17—C18110.9 (3)
C1—N1—H1118.4 (17)C16—C17—H17A109.5
P1—N1—H1113.4 (16)C18—C17—H17A109.5
O2—C1—N1122.3 (2)C16—C17—H17B109.5
O2—C1—C4121.5 (2)C18—C17—H17B109.5
N1—C1—C4116.18 (19)H17A—C17—H17B108.0
N3—C3—H3A109.5N2—C10—C11111.3 (2)
N3—C3—H3B109.5N2—C10—C15114.0 (2)
H3A—C3—H3B109.5C11—C10—C15111.6 (2)
N3—C3—H3C109.5N2—C10—H10106.5
H3A—C3—H3C109.5C11—C10—H10106.5
H3B—C3—H3C109.5C15—C10—H10106.5
C2—N2—C10117.30 (19)C14—C15—C10111.0 (2)
C2—N2—P1116.26 (16)C14—C15—H15A109.4
C10—N2—P1124.22 (15)C10—C15—H15A109.4
C18—C19—C20110.6 (3)C14—C15—H15B109.4
C18—C19—H19A109.5C10—C15—H15B109.4
C20—C19—H19A109.5H15A—C15—H15B108.0
C18—C19—H19B109.5C15—C14—C13111.6 (3)
C20—C19—H19B109.5C15—C14—H14A109.3
H19A—C19—H19B108.1C13—C14—H14A109.3
C19—C20—C21112.0 (3)C15—C14—H14B109.3
C19—C20—H20A109.2C13—C14—H14B109.3
C21—C20—H20A109.2H14A—C14—H14B108.0
C19—C20—H20B109.2C12—C13—C14110.4 (3)
C21—C20—H20B109.2C12—C13—H13A109.6
H20A—C20—H20B107.9C14—C13—H13A109.6
C16—C21—C20109.7 (3)C12—C13—H13B109.6
C16—C21—H21A109.7C14—C13—H13B109.6
C20—C21—H21A109.7H13A—C13—H13B108.1
C16—C21—H21B109.7C13—C12—C11111.3 (3)
C20—C21—H21B109.7C13—C12—H12A109.4
H21A—C21—H21B108.2C11—C12—H12A109.4
N3—C16—C21112.0 (2)C13—C12—H12B109.4
N3—C16—C17112.4 (2)C11—C12—H12B109.4
C21—C16—C17110.9 (2)H12A—C12—H12B108.0
N3—C16—H16107.1C10—C11—C12110.4 (3)
C21—C16—H16107.1C10—C11—H11A109.6
C17—C16—H16107.1C12—C11—H11A109.6
C3—N3—C16117.01 (18)C10—C11—H11B109.6
C3—N3—P1123.44 (16)C12—C11—H11B109.6
C16—N3—P1118.25 (15)H11A—C11—H11B108.1
C5—C4—C9120.2 (2)N2—C2—H2A109.5
C5—C4—C1122.4 (2)N2—C2—H2B109.5
C9—C4—C1117.4 (2)H2A—C2—H2B109.5
C6—C5—C4117.8 (3)N2—C2—H2C109.5
C6—C5—H5121.1H2A—C2—H2C109.5
C4—C5—H5121.1H2B—C2—H2C109.5
C7—C6—F1119.7 (3)C8—C9—C4119.2 (3)
C7—C6—C5123.4 (3)C8—C9—H9120.4
F1—C6—C5116.9 (3)C4—C9—H9120.4
C6—C7—C8118.0 (3)C7—C8—C9121.4 (3)
C6—C7—H7121.0C7—C8—H8119.3
C8—C7—H7121.0C9—C8—H8119.3
O1—P1—N1—C1−165.46 (18)N1—C1—C4—C9154.3 (2)
N2—P1—N1—C170.1 (2)C9—C4—C5—C60.1 (3)
N3—P1—N1—C1−44.8 (2)C1—C4—C5—C6−178.2 (2)
P1—N1—C1—O2−5.7 (3)C4—C5—C6—C7−1.4 (4)
P1—N1—C1—C4173.91 (15)C4—C5—C6—F1−179.8 (2)
O1—P1—N2—C260.3 (2)F1—C6—C7—C8179.8 (3)
N3—P1—N2—C2−63.5 (2)C5—C6—C7—C81.4 (5)
N1—P1—N2—C2178.06 (19)C20—C19—C18—C1756.5 (5)
O1—P1—N2—C10−102.28 (19)N3—C16—C17—C18−176.7 (3)
N3—P1—N2—C10133.94 (18)C21—C16—C17—C1857.1 (4)
N1—P1—N2—C1015.5 (2)C19—C18—C17—C16−57.4 (4)
C18—C19—C20—C21−56.3 (5)C2—N2—C10—C1163.9 (3)
C19—C20—C21—C1655.5 (4)P1—N2—C10—C11−133.7 (2)
C20—C21—C16—N3178.0 (3)C2—N2—C10—C15−63.3 (3)
C20—C21—C16—C17−55.6 (4)P1—N2—C10—C1599.0 (2)
C21—C16—N3—C358.5 (3)N2—C10—C15—C14−178.1 (2)
C17—C16—N3—C3−67.1 (3)C11—C10—C15—C1454.8 (3)
C21—C16—N3—P1−134.1 (2)C10—C15—C14—C13−55.0 (3)
C17—C16—N3—P1100.3 (2)C15—C14—C13—C1256.0 (4)
O1—P1—N3—C3−156.59 (19)C14—C13—C12—C11−56.9 (4)
N2—P1—N3—C3−29.5 (2)N2—C10—C11—C12175.9 (3)
N1—P1—N3—C385.8 (2)C15—C10—C11—C12−55.6 (4)
O1—P1—N3—C1636.84 (18)C13—C12—C11—C1056.8 (4)
N2—P1—N3—C16163.94 (15)C5—C4—C9—C81.1 (4)
N1—P1—N3—C16−80.77 (17)C1—C4—C9—C8179.5 (2)
O2—C1—C4—C5152.3 (2)C6—C7—C8—C9−0.1 (5)
N1—C1—C4—C5−27.3 (3)C4—C9—C8—C7−1.1 (4)
O2—C1—C4—C9−26.1 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.78 (2)2.04 (2)2.807 (2)165 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.78 (2)2.04 (2)2.807 (2)165 (2)

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The hydrogen-bonded dimers of N,N',N''-tricyclohexylphosphoric triamide in new tin(IV) and copper(II) complexes.

Authors:  Mehrdad Pourayoubi; James A Golen; Mahnaz Rostami Chaijan; Vladimir Divjakovic; Monireh Negari; Arnold L Rheingold
Journal:  Acta Crystallogr C       Date:  2011-04-28       Impact factor: 1.172

3.  N-(2-Fluoro-benzo-yl)-N',N''-bis-(4-methyl-phen-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Atekeh Tarahhomi; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19

4.  N,N'-Bis(2-chloro-benz-yl)-N''-(2,2,2-trichloro-acet-yl)phospho-ric triamide.

Authors:  Mehrdad Pourayoubi; Hassan Fadaei; Masood Parvez
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-16

5.  N-[Bis(morpholin-4-yl)phosphino-yl]-2-chloro-2,2-difluoro-acetamide.

Authors:  Mehrdad Pourayoubi; Anahid Saneei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-30
  5 in total

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