Literature DB >> 21754180

7-Hy-droxy-8-isopropyl-1,1,4a-trimethyl-4a,9,10,10a-tetra-hydro-phenanthren-2(1H)-one.

Ahmed Benharref, Essêdiya Lassaba, Noureddine Mazoir, Jean-Claude Daran, Moha Berraho.   

Abstract

The title compound, C(20)H(26)O(2), was isolated from a chloro-form extract of Tetra-clinis articulata wood. The mol-ecule contains three fused rings which exhibit different conformations. The non-aromatic oxo-substituted ring has a screw-boat conformation, while the central ring has a half-chair conformation. In the crystal, mol-ecules are linked to each other by inter-molecular O-H⋯O hydrogen bonds involving the carbonyl and hy-droxy groups.

Entities:  

Year:  2011        PMID: 21754180      PMCID: PMC3099889          DOI: 10.1107/S1600536811009561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological activity of diterpenoids, see: Atta-ur-Rahman & Choudhary (1999 ▶); Azucena & Mobashery (2001 ▶); Panter et al. (2002 ▶); Ulusu et al. (2002 ▶). For their use in traditional medicine, see: Bellakhdar (1997 ▶) and for their medicinal properties, see: Barrero et al. (2003 ▶); Comte et al. (1995 ▶); Evidente et al. (1997 ▶). For the synthesis see: Zeroual et al. (2007 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C20H26O2 M = 298.41 Monoclinic, a = 11.6731 (8) Å b = 6.4314 (4) Å c = 12.1488 (10) Å β = 111.592 (9)° V = 848.06 (11) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 180 K 0.48 × 0.36 × 0.29 mm

Data collection

Agilent Xcalibur Eos Gemini ultra diffractometer 9252 measured reflections 1893 independent reflections 1591 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.128 S = 1.03 1893 reflections 207 parameters 1 restraint H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811009561/fj2405sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811009561/fj2405Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H26O2F(000) = 324
Mr = 298.41Dx = 1.169 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3905 reflections
a = 11.6731 (8) Åθ = 3.6–29.2°
b = 6.4314 (4) ŵ = 0.07 mm1
c = 12.1488 (10) ÅT = 180 K
β = 111.592 (9)°Prism, colourless
V = 848.06 (11) Å30.48 × 0.36 × 0.29 mm
Z = 2
Agilent Xcalibur Eos Gemini ultra diffractometer1591 reflections with I > 2σ(I)
Radiation source: Enhance (Mo) X-ray SourceRint = 0.066
graphiteθmax = 26.4°, θmin = 3.7°
Detector resolution: 16.1978 pixels mm-1h = −14→14
ω scansk = −8→8
9252 measured reflectionsl = −15→15
1893 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0659P)2 + 0.2266P] where P = (Fo2 + 2Fc2)/3
1893 reflections(Δ/σ)max < 0.001
207 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.22 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.3286 (2)0.3531 (5)0.7146 (2)0.0290 (6)
C2−0.4104 (2)0.3898 (5)0.5849 (3)0.0314 (7)
C3−0.3525 (3)0.4063 (6)0.4963 (3)0.0364 (7)
H3−0.40160.38220.41540.045 (10)*
C4−0.2337 (3)0.4540 (5)0.5251 (3)0.0324 (7)
H4−0.20190.46670.46380.047 (10)*
C4A−0.1473 (2)0.4886 (5)0.6526 (2)0.0283 (6)
C4B−0.0133 (2)0.4386 (4)0.6696 (2)0.0274 (6)
C50.0337 (2)0.5177 (5)0.5876 (3)0.0296 (6)
H5−0.01790.60000.52370.036*
C60.1537 (2)0.4788 (5)0.5974 (3)0.0303 (7)
H60.18460.53710.54200.036*
C70.2287 (2)0.3544 (5)0.6887 (2)0.0299 (6)
C80.1866 (2)0.2729 (5)0.7742 (2)0.0287 (6)
C8A0.0651 (2)0.3211 (5)0.7647 (2)0.0273 (6)
C90.0224 (2)0.2470 (6)0.8626 (3)0.0351 (7)
H9A0.08670.28140.94020.042*
H9B0.01360.09380.85790.042*
C10−0.0995 (2)0.3422 (6)0.8568 (2)0.0336 (7)
H10A−0.13290.26260.90790.040*
H10B−0.08610.48750.88560.040*
C10A−0.1905 (2)0.3373 (5)0.7292 (2)0.0282 (6)
H10−0.18170.19530.69970.034*
C110.2702 (3)0.1345 (6)0.8719 (3)0.0383 (8)
H110.22290.09780.92310.046*
C120.3000 (3)−0.0718 (6)0.8246 (4)0.0526 (9)
H12A0.3534−0.04520.78000.079*
H12B0.2233−0.13710.77250.079*
H21A0.3421−0.16490.89110.079*
C130.3870 (3)0.2455 (7)0.9521 (3)0.0474 (9)
H13A0.43960.27610.90710.071*
H13B0.43170.15591.01950.071*
H13C0.36460.37570.98100.071*
C15−0.3538 (3)0.5228 (6)0.7922 (3)0.0422 (8)
H15A−0.44220.52720.77730.063*
H15B−0.32740.65800.77270.063*
H15C−0.30790.49130.87580.063*
C16−0.3680 (3)0.1419 (5)0.7484 (3)0.0371 (7)
H16A−0.36340.03550.69250.056*
H16B−0.45280.15150.74570.056*
H16C−0.31300.10420.82860.056*
C18−0.1553 (3)0.7207 (5)0.6809 (3)0.0427 (8)
H18A−0.11740.80470.63620.064*
H18B−0.11170.74420.76580.064*
H18C−0.24190.76060.65870.064*
O1−0.52293 (18)0.4045 (4)0.5543 (2)0.0440 (6)
O20.34674 (17)0.3068 (4)0.69940 (18)0.0396 (6)
H20.36230.36350.64420.059*
U11U22U33U12U13U23
C10.0193 (12)0.0352 (16)0.0359 (15)0.0034 (12)0.0140 (11)0.0023 (13)
C20.0210 (13)0.0368 (17)0.0389 (15)0.0037 (12)0.0138 (11)0.0033 (13)
C30.0240 (14)0.056 (2)0.0299 (14)0.0060 (14)0.0106 (11)0.0032 (14)
C40.0247 (14)0.0416 (18)0.0355 (15)0.0089 (12)0.0165 (12)0.0062 (13)
C4A0.0213 (13)0.0343 (16)0.0338 (14)0.0029 (12)0.0153 (11)0.0026 (13)
C4B0.0208 (13)0.0313 (16)0.0338 (14)−0.0026 (11)0.0145 (11)−0.0017 (12)
C50.0245 (14)0.0317 (15)0.0345 (14)0.0003 (12)0.0129 (11)0.0013 (12)
C60.0258 (14)0.0365 (17)0.0346 (14)−0.0068 (13)0.0182 (12)−0.0015 (13)
C70.0166 (12)0.0403 (17)0.0354 (15)−0.0036 (13)0.0126 (11)−0.0034 (14)
C80.0204 (13)0.0335 (15)0.0335 (14)−0.0016 (12)0.0115 (11)0.0003 (12)
C8A0.0180 (12)0.0329 (15)0.0334 (14)−0.0017 (11)0.0125 (11)0.0000 (12)
C90.0195 (14)0.0533 (19)0.0340 (15)−0.0013 (13)0.0117 (11)0.0041 (14)
C100.0235 (13)0.0494 (19)0.0310 (14)−0.0024 (14)0.0136 (11)0.0025 (14)
C10A0.0171 (12)0.0396 (16)0.0309 (14)0.0030 (12)0.0124 (10)0.0005 (13)
C110.0193 (13)0.055 (2)0.0408 (16)0.0001 (14)0.0119 (12)0.0067 (15)
C120.0414 (19)0.049 (2)0.061 (2)0.0066 (16)0.0101 (17)0.0116 (18)
C130.0300 (17)0.069 (3)0.0414 (18)−0.0075 (16)0.0115 (14)0.0022 (18)
C150.0279 (16)0.053 (2)0.054 (2)−0.0006 (15)0.0258 (15)−0.0119 (17)
C160.0241 (14)0.0423 (18)0.0495 (18)0.0017 (13)0.0187 (13)0.0097 (15)
C180.0426 (19)0.0361 (19)0.061 (2)0.0025 (14)0.0327 (17)0.0003 (16)
O10.0197 (10)0.0687 (17)0.0459 (12)0.0077 (10)0.0146 (9)0.0109 (12)
O20.0212 (10)0.0626 (16)0.0409 (12)0.0021 (10)0.0184 (9)0.0044 (11)
C1—C21.531 (4)C9—H9A0.9900
C1—C161.538 (4)C9—H9B0.9900
C1—C151.539 (4)C10—C10A1.523 (4)
C1—C10A1.559 (3)C10—H10A0.9900
C2—O11.230 (3)C10—H10B0.9900
C2—C31.471 (4)C10A—H101.0000
C3—C41.336 (4)C11—C131.530 (5)
C3—H30.9500C11—C121.536 (5)
C4—C4A1.522 (4)C11—H111.0000
C4—H40.9500C12—H12A0.9800
C4A—C4B1.535 (4)C12—H12B0.9800
C4A—C181.542 (4)C12—H21A0.9800
C4A—C10A1.554 (4)C13—H13A0.9800
C4B—C51.397 (4)C13—H13B0.9800
C4B—C8A1.401 (4)C13—H13C0.9800
C5—C61.385 (4)C15—H15A0.9800
C5—H50.9500C15—H15B0.9800
C6—C71.386 (4)C15—H15C0.9800
C6—H60.9500C16—H16A0.9800
C7—O21.371 (3)C16—H16B0.9800
C7—C81.403 (4)C16—H16C0.9800
C8—C8A1.414 (4)C18—H18A0.9800
C8—C111.517 (4)C18—H18B0.9800
C8A—C91.526 (4)C18—H18C0.9800
C9—C101.526 (4)O2—H20.8400
C2—C1—C16106.1 (2)C9—C10—H10A109.8
C2—C1—C15109.5 (2)C10A—C10—H10B109.8
C16—C1—C15108.7 (2)C9—C10—H10B109.8
C2—C1—C10A110.7 (2)H10A—C10—H10B108.3
C16—C1—C10A108.1 (2)C10—C10A—C4A109.7 (2)
C15—C1—C10A113.5 (2)C10—C10A—C1114.8 (2)
O1—C2—C3120.0 (3)C4A—C10A—C1116.2 (2)
O1—C2—C1121.0 (2)C10—C10A—H10104.9
C3—C2—C1119.0 (2)C4A—C10A—H10104.9
C4—C3—C2122.5 (3)C1—C10A—H10104.9
C4—C3—H3118.8C8—C11—C13113.0 (3)
C2—C3—H3118.8C8—C11—C12112.5 (3)
C3—C4—C4A122.4 (2)C13—C11—C12111.7 (3)
C3—C4—H4118.8C8—C11—H11106.3
C4A—C4—H4118.8C13—C11—H11106.3
C4—C4A—C4B111.5 (2)C12—C11—H11106.3
C4—C4A—C18107.3 (3)C11—C12—H12A109.5
C4B—C4A—C18108.4 (3)C11—C12—H12B109.5
C4—C4A—C10A106.2 (2)H12A—C12—H12B109.5
C4B—C4A—C10A109.2 (2)C11—C12—H21A109.5
C18—C4A—C10A114.4 (2)H12A—C12—H21A109.5
C5—C4B—C8A118.4 (2)H12B—C12—H21A109.5
C5—C4B—C4A118.4 (2)C11—C13—H13A109.5
C8A—C4B—C4A123.2 (2)C11—C13—H13B109.5
C6—C5—C4B121.5 (3)H13A—C13—H13B109.5
C6—C5—H5119.2C11—C13—H13C109.5
C4B—C5—H5119.2H13A—C13—H13C109.5
C5—C6—C7119.6 (2)H13B—C13—H13C109.5
C5—C6—H6120.2C1—C15—H15A109.5
C7—C6—H6120.2C1—C15—H15B109.5
O2—C7—C6121.4 (2)H15A—C15—H15B109.5
O2—C7—C8117.4 (2)C1—C15—H15C109.5
C6—C7—C8121.2 (2)H15A—C15—H15C109.5
C7—C8—C8A118.1 (3)H15B—C15—H15C109.5
C7—C8—C11119.9 (2)C1—C16—H16A109.5
C8A—C8—C11122.0 (2)C1—C16—H16B109.5
C4B—C8A—C8121.1 (2)H16A—C16—H16B109.5
C4B—C8A—C9120.7 (2)C1—C16—H16C109.5
C8—C8A—C9118.2 (2)H16A—C16—H16C109.5
C8A—C9—C10113.9 (3)H16B—C16—H16C109.5
C8A—C9—H9A108.8C4A—C18—H18A109.5
C10—C9—H9A108.8C4A—C18—H18B109.5
C8A—C9—H9B108.8H18A—C18—H18B109.5
C10—C9—H9B108.8C4A—C18—H18C109.5
H9A—C9—H9B107.7H18A—C18—H18C109.5
C10A—C10—C9109.2 (2)H18B—C18—H18C109.5
C10A—C10—H10A109.8C7—O2—H2109.5
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.842.032.791 (3)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.842.032.791 (3)150

Symmetry code: (i) .

  6 in total

Review 1.  Diterpenoid and steroidal alkaloids.

Authors:  M I Choudhary
Journal:  Nat Prod Rep       Date:  1999-10       Impact factor: 13.423

2.  A short history of SHELX.

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3.  Abietic acid inhibits lipoxygenase activity.

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Journal:  Phytother Res       Date:  2002-02       Impact factor: 5.878

Review 4.  Aminoglycoside-modifying enzymes: mechanisms of catalytic processes and inhibition.

Authors:  E Azucena; S Mobashery
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5.  Diterpenoids from Tetraclinis articulata that inhibit various human leukocyte functions.

Authors:  Alejandro F Barrero; José F Quílez del Moral; Rut Lucas; Miguel Payá; Mohamed Akssira; Said Akaad; Fouad Mellouki
Journal:  J Nat Prod       Date:  2003-06       Impact factor: 4.050

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Crystal structure of (4bS,8aR)-1-isopropyl-4b,8,8-trimethyl-7-oxo-4b,7,8,8a,9,10-hexa-hydro-phenanthren-2-yl acetate.

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  1 in total

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