| Literature DB >> 21754471 |
Md Abdus Salam, Md Abu Affan, Mohd Razip Asaruddin, Seik Weng Ng, Edward R T Tiekink.
Abstract
In the title thio-urea derivative, C(16)H(17)N(3)OS, the hy-droxy- and methyl-substituted benzene rings form dihedral angles of 9.62 (12) and 55.69 (6)°, respectively, with the central CN(3)S chromophore (r.m.s. deviation = 0.0117 Å). An intra-molecular O-H⋯N hydrogen bond ensures the coplanarity of the central atoms. The H atoms of the NH groups are syn and the conformation about the N=C double bond [1.295 (4) Å] is E. In the crystal, helical supra-molecular chains sustained primarily by N-H⋯S hydrogen bonds are found. Additional stabilization is provided by C-H⋯π and π-π [ring centroid(hy-droxy-benzene)⋯ring centroid(methyl-benzene) = 3.8524 (18) Å] inter-actions.Entities:
Year: 2011 PMID: 21754471 PMCID: PMC3089068 DOI: 10.1107/S1600536811013729
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H17N3OS | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1905 reflections |
| θ = 2.8–29.3° | |
| µ = 0.22 mm−1 | |
| β = 94.358 (5)° | Prism, light-yellow |
| 0.30 × 0.10 × 0.05 mm | |
| Agilent Supernova Dual diffractometer with an Atlas detector | 3375 independent reflections |
| Radiation source: SuperNova (Mo) X-ray Source | 2094 reflections with |
| Mirror | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 27.5°, θmin = 2.8° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 7614 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3375 reflections | (Δ/σ)max < 0.001 |
| 201 parameters | Δρmax = 0.34 e Å−3 |
| 3 restraints | Δρmin = −0.34 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.46230 (5) | 0.24817 (10) | 0.38597 (5) | 0.0188 (2) | |
| O1 | 0.21619 (14) | 0.2307 (3) | 0.31997 (15) | 0.0250 (5) | |
| H1O | 0.2693 (11) | 0.261 (4) | 0.308 (2) | 0.038* | |
| N1 | 0.33770 (15) | 0.3710 (3) | 0.22261 (17) | 0.0182 (6) | |
| N2 | 0.42781 (16) | 0.4196 (3) | 0.21980 (18) | 0.0190 (6) | |
| H2N | 0.4433 (19) | 0.497 (3) | 0.1764 (16) | 0.023* | |
| N3 | 0.57409 (16) | 0.4362 (3) | 0.27942 (17) | 0.0197 (6) | |
| H3N | 0.5801 (19) | 0.496 (4) | 0.2259 (13) | 0.024* | |
| C1 | 0.1592 (2) | 0.2588 (4) | 0.2410 (2) | 0.0229 (7) | |
| C2 | 0.0685 (2) | 0.2066 (5) | 0.2458 (3) | 0.0309 (8) | |
| H2 | 0.0496 | 0.1544 | 0.3027 | 0.037* | |
| C3 | 0.0062 (2) | 0.2298 (5) | 0.1692 (3) | 0.0331 (9) | |
| H3A | −0.0553 | 0.1927 | 0.1732 | 0.040* | |
| C4 | 0.0327 (2) | 0.3073 (5) | 0.0857 (3) | 0.0320 (8) | |
| H4 | −0.0104 | 0.3236 | 0.0327 | 0.038* | |
| C5 | 0.1220 (2) | 0.3603 (4) | 0.0806 (2) | 0.0260 (8) | |
| H5A | 0.1396 | 0.4142 | 0.0236 | 0.031* | |
| C6 | 0.18777 (19) | 0.3372 (4) | 0.1568 (2) | 0.0200 (7) | |
| C7 | 0.28345 (19) | 0.3879 (4) | 0.1464 (2) | 0.0189 (7) | |
| C8 | 0.3131 (2) | 0.4548 (4) | 0.0530 (2) | 0.0229 (7) | |
| H8A | 0.3795 | 0.4432 | 0.0525 | 0.034* | |
| H8B | 0.2957 | 0.5827 | 0.0445 | 0.034* | |
| H8C | 0.2834 | 0.3824 | 0.0012 | 0.034* | |
| C9 | 0.48965 (19) | 0.3751 (4) | 0.2920 (2) | 0.0174 (7) | |
| C10 | 0.65424 (19) | 0.4166 (4) | 0.3422 (2) | 0.0172 (7) | |
| C11 | 0.6563 (2) | 0.4776 (4) | 0.4351 (2) | 0.0201 (7) | |
| H11 | 0.6024 | 0.5242 | 0.4592 | 0.024* | |
| C12 | 0.7355 (2) | 0.4712 (4) | 0.4928 (2) | 0.0252 (7) | |
| H12A | 0.7364 | 0.5112 | 0.5570 | 0.030* | |
| C13 | 0.8147 (2) | 0.4057 (4) | 0.4568 (2) | 0.0253 (7) | |
| H13 | 0.8703 | 0.4035 | 0.4960 | 0.030* | |
| C14 | 0.8128 (2) | 0.3441 (4) | 0.3647 (2) | 0.0231 (7) | |
| H14 | 0.8671 | 0.2974 | 0.3414 | 0.028* | |
| C15 | 0.73287 (19) | 0.3485 (4) | 0.3047 (2) | 0.0195 (7) | |
| C16 | 0.7318 (2) | 0.2841 (4) | 0.2034 (2) | 0.0260 (8) | |
| H16A | 0.7815 | 0.1969 | 0.1974 | 0.039* | |
| H16B | 0.7401 | 0.3882 | 0.1615 | 0.039* | |
| H16C | 0.6733 | 0.2253 | 0.1851 | 0.039* |
| S1 | 0.0225 (4) | 0.0163 (4) | 0.0179 (4) | −0.0009 (3) | 0.0039 (3) | −0.0001 (3) |
| O1 | 0.0214 (11) | 0.0291 (13) | 0.0247 (13) | −0.0029 (10) | 0.0027 (10) | −0.0005 (10) |
| N1 | 0.0150 (12) | 0.0148 (13) | 0.0247 (15) | −0.0010 (10) | 0.0019 (10) | −0.0010 (11) |
| N2 | 0.0179 (13) | 0.0166 (14) | 0.0222 (15) | −0.0023 (10) | 0.0002 (11) | 0.0044 (11) |
| N3 | 0.0187 (13) | 0.0205 (14) | 0.0199 (15) | −0.0006 (11) | 0.0016 (11) | 0.0052 (11) |
| C1 | 0.0245 (16) | 0.0172 (16) | 0.0269 (18) | 0.0046 (13) | 0.0018 (13) | −0.0085 (14) |
| C2 | 0.0234 (17) | 0.030 (2) | 0.040 (2) | −0.0028 (14) | 0.0098 (15) | −0.0020 (16) |
| C3 | 0.0198 (17) | 0.031 (2) | 0.049 (2) | −0.0018 (14) | 0.0039 (16) | −0.0077 (17) |
| C4 | 0.0248 (18) | 0.0298 (19) | 0.040 (2) | 0.0018 (15) | −0.0039 (15) | 0.0006 (17) |
| C5 | 0.0242 (17) | 0.0207 (17) | 0.032 (2) | 0.0010 (14) | −0.0026 (14) | −0.0014 (15) |
| C6 | 0.0174 (15) | 0.0158 (16) | 0.0266 (18) | −0.0010 (12) | 0.0003 (13) | −0.0037 (13) |
| C7 | 0.0209 (15) | 0.0104 (15) | 0.0250 (18) | 0.0038 (12) | 0.0004 (13) | −0.0030 (13) |
| C8 | 0.0248 (16) | 0.0192 (17) | 0.0247 (18) | −0.0002 (13) | 0.0021 (13) | −0.0036 (14) |
| C9 | 0.0180 (15) | 0.0151 (15) | 0.0197 (16) | 0.0034 (12) | 0.0045 (12) | −0.0028 (13) |
| C10 | 0.0185 (15) | 0.0126 (15) | 0.0205 (17) | −0.0006 (12) | 0.0014 (12) | 0.0014 (12) |
| C11 | 0.0272 (16) | 0.0095 (14) | 0.0239 (18) | 0.0015 (13) | 0.0045 (13) | −0.0009 (13) |
| C12 | 0.0354 (19) | 0.0158 (16) | 0.0235 (18) | −0.0033 (14) | −0.0037 (14) | 0.0013 (14) |
| C13 | 0.0249 (17) | 0.0192 (17) | 0.030 (2) | −0.0021 (13) | −0.0091 (14) | 0.0055 (14) |
| C14 | 0.0171 (15) | 0.0183 (16) | 0.034 (2) | 0.0001 (13) | 0.0034 (13) | 0.0026 (15) |
| C15 | 0.0262 (16) | 0.0132 (15) | 0.0200 (17) | −0.0058 (13) | 0.0063 (13) | −0.0003 (13) |
| C16 | 0.0275 (17) | 0.0240 (18) | 0.0276 (19) | −0.0018 (14) | 0.0094 (14) | −0.0020 (14) |
| S1—C9 | 1.694 (3) | C6—C7 | 1.473 (4) |
| O1—C1 | 1.357 (4) | C7—C8 | 1.500 (4) |
| O1—H1O | 0.842 (10) | C8—H8A | 0.9800 |
| N1—C7 | 1.295 (4) | C8—H8B | 0.9800 |
| N1—N2 | 1.375 (3) | C8—H8C | 0.9800 |
| N2—C9 | 1.352 (4) | C10—C11 | 1.383 (4) |
| N2—H2N | 0.880 (10) | C10—C15 | 1.400 (4) |
| N3—C9 | 1.344 (3) | C11—C12 | 1.369 (4) |
| N3—C10 | 1.426 (4) | C11—H11 | 0.9500 |
| N3—H3N | 0.882 (10) | C12—C13 | 1.391 (4) |
| C1—C2 | 1.394 (4) | C12—H12A | 0.9500 |
| C1—C6 | 1.411 (4) | C13—C14 | 1.373 (4) |
| C2—C3 | 1.372 (5) | C13—H13 | 0.9500 |
| C2—H2 | 0.9500 | C14—C15 | 1.395 (4) |
| C3—C4 | 1.390 (5) | C14—H14 | 0.9500 |
| C3—H3A | 0.9500 | C15—C16 | 1.503 (4) |
| C4—C5 | 1.376 (4) | C16—H16A | 0.9800 |
| C4—H4 | 0.9500 | C16—H16B | 0.9800 |
| C5—C6 | 1.400 (4) | C16—H16C | 0.9800 |
| C5—H5A | 0.9500 | ||
| C1—O1—H1O | 108 (2) | H8A—C8—H8B | 109.5 |
| C7—N1—N2 | 119.0 (2) | C7—C8—H8C | 109.5 |
| C9—N2—N1 | 120.6 (2) | H8A—C8—H8C | 109.5 |
| C9—N2—H2N | 119 (2) | H8B—C8—H8C | 109.5 |
| N1—N2—H2N | 119.3 (19) | N3—C9—N2 | 113.2 (2) |
| C9—N3—C10 | 127.7 (2) | N3—C9—S1 | 124.3 (2) |
| C9—N3—H3N | 115.6 (19) | N2—C9—S1 | 122.4 (2) |
| C10—N3—H3N | 116.7 (19) | C11—C10—C15 | 121.0 (3) |
| O1—C1—C2 | 116.8 (3) | C11—C10—N3 | 120.9 (3) |
| O1—C1—C6 | 123.2 (3) | C15—C10—N3 | 117.9 (3) |
| C2—C1—C6 | 120.0 (3) | C12—C11—C10 | 120.5 (3) |
| C3—C2—C1 | 120.8 (3) | C12—C11—H11 | 119.7 |
| C3—C2—H2 | 119.6 | C10—C11—H11 | 119.7 |
| C1—C2—H2 | 119.6 | C11—C12—C13 | 119.5 (3) |
| C2—C3—C4 | 120.2 (3) | C11—C12—H12A | 120.2 |
| C2—C3—H3A | 119.9 | C13—C12—H12A | 120.2 |
| C4—C3—H3A | 119.9 | C14—C13—C12 | 120.1 (3) |
| C5—C4—C3 | 119.4 (3) | C14—C13—H13 | 120.0 |
| C5—C4—H4 | 120.3 | C12—C13—H13 | 120.0 |
| C3—C4—H4 | 120.3 | C13—C14—C15 | 121.5 (3) |
| C4—C5—C6 | 122.1 (3) | C13—C14—H14 | 119.3 |
| C4—C5—H5A | 119.0 | C15—C14—H14 | 119.3 |
| C6—C5—H5A | 119.0 | C14—C15—C10 | 117.4 (3) |
| C5—C6—C1 | 117.6 (3) | C14—C15—C16 | 121.1 (3) |
| C5—C6—C7 | 120.1 (3) | C10—C15—C16 | 121.5 (3) |
| C1—C6—C7 | 122.3 (3) | C15—C16—H16A | 109.5 |
| N1—C7—C6 | 115.1 (3) | C15—C16—H16B | 109.5 |
| N1—C7—C8 | 123.9 (3) | H16A—C16—H16B | 109.5 |
| C6—C7—C8 | 120.9 (3) | C15—C16—H16C | 109.5 |
| C7—C8—H8A | 109.5 | H16A—C16—H16C | 109.5 |
| C7—C8—H8B | 109.5 | H16B—C16—H16C | 109.5 |
| C7—N1—N2—C9 | −168.5 (3) | C10—N3—C9—N2 | 178.6 (3) |
| O1—C1—C2—C3 | −179.9 (3) | C10—N3—C9—S1 | −3.6 (4) |
| C6—C1—C2—C3 | 0.3 (5) | N1—N2—C9—N3 | −178.5 (2) |
| C1—C2—C3—C4 | −0.5 (5) | N1—N2—C9—S1 | 3.7 (4) |
| C2—C3—C4—C5 | 0.1 (5) | C9—N3—C10—C11 | −56.4 (4) |
| C3—C4—C5—C6 | 0.6 (5) | C9—N3—C10—C15 | 129.0 (3) |
| C4—C5—C6—C1 | −0.8 (5) | C15—C10—C11—C12 | −0.5 (4) |
| C4—C5—C6—C7 | 177.0 (3) | N3—C10—C11—C12 | −174.9 (3) |
| O1—C1—C6—C5 | −179.4 (3) | C10—C11—C12—C13 | 1.1 (4) |
| C2—C1—C6—C5 | 0.3 (4) | C11—C12—C13—C14 | −1.5 (5) |
| O1—C1—C6—C7 | 2.8 (5) | C12—C13—C14—C15 | 1.2 (5) |
| C2—C1—C6—C7 | −177.4 (3) | C13—C14—C15—C10 | −0.6 (4) |
| N2—N1—C7—C6 | −178.4 (2) | C13—C14—C15—C16 | 178.8 (3) |
| N2—N1—C7—C8 | 1.2 (4) | C11—C10—C15—C14 | 0.2 (4) |
| C5—C6—C7—N1 | 176.2 (3) | N3—C10—C15—C14 | 174.8 (3) |
| C1—C6—C7—N1 | −6.1 (4) | C11—C10—C15—C16 | −179.2 (3) |
| C5—C6—C7—C8 | −3.4 (4) | N3—C10—C15—C16 | −4.6 (4) |
| C1—C6—C7—C8 | 174.3 (3) |
| H··· | ||||
| O1—H1o···N1 | 0.842 (10) | 1.81 (2) | 2.551 (3) | 145 (3) |
| N2—H2n···S1i | 0.880 (10) | 2.508 (16) | 3.323 (2) | 154 (3) |
| N3—H3n···S1i | 0.882 (10) | 2.485 (17) | 3.286 (3) | 151 (2) |
| C8—H8b···Cg1i | 0.98 | 2.59 | 3.501 (3) | 155 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C10–C15 ring.
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1o⋯N1 | 0.84 (1) | 1.81 (2) | 2.551 (3) | 145 (3) |
| N2—H2n⋯S1i | 0.88 (1) | 2.51 (2) | 3.323 (2) | 154 (3) |
| N3—H3n⋯S1i | 0.88 (1) | 2.49 (2) | 3.286 (3) | 151 (2) |
| C8—H8b⋯ | 0.98 | 2.59 | 3.501 (3) | 155 |
Symmetry code: (i) .