Literature DB >> 21578059

Di-μ-aqua-bis-(μ-pyridazine-4-carboxyl-ato-κN:N')bis-[triaqua-(pyridazine-4-carboxyl-ato-κO,O')lead(II)] dihydrate.

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The structure of the title compound, [Pb(2)(C(5)H(3)N(2)O(2))(4)(H(2)O)(6)]·2H(2)O, is composed of dimeric mol-ecules in which two symmetry-related Pb(2+) ions are bridged by a pair of two pyridazine-4-carboxyl-ate ligand mol-ecules via both heterocyclic N atoms and two water O atoms. Each Pb(2+) ion is also coordinated by two carboxyl-ate O atoms and three water O atoms, leading to a highly irregular coordination polyhedron around Pb(2+). The dimers are inter-connected by hydrogen bonds between coordinated and uncoordinated water mol-ecules and the carboxyl-ate O atoms. O-H⋯N inter-actions are also present.

Entities:  

Year:  2009        PMID: 21578059      PMCID: PMC2971413          DOI: 10.1107/S1600536809039658

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of pyridazine-4-carboxylic acid hydro­chloride, see: Starosta & Leciejewicz (2008 ▶). Centrosymmetric dimeric mol­ecules were reported in the structure of a calcium(II) complex with pyridazine-3-dicarboxyl­ate and water ligands (Starosta & Leciejewicz, 2007 ▶) and an uranyl complex with the same ligands (Leciejewicz & Starosta, (2009 ▶). Each dimer shows a different bridging mode.

Experimental

Crystal data

[Pb2(C5H3N2O2)4(H2O)6]·2H2O M = 1086.92 Triclinic, a = 7.0762 (14) Å b = 9.2967 (19) Å c = 12.830 (3) Å α = 92.05 (3)° β = 105.13 (3)° γ = 102.85 (3)° V = 790.4 (3) Å3 Z = 1 Mo Kα radiation μ = 10.73 mm−1 T = 293 K 0.35 × 0.18 × 0.03 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.254, T max = 0.762 4862 measured reflections 4512 independent reflections 3958 reflections with I > 2σ(I) R int = 0.016 3 standard reflections every 200 reflections intensity decay: 1.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.122 S = 1.06 4512 reflections 253 parameters 15 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 5.63 e Å−3 Δρmin = −3.77 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039658/bv2128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039658/bv2128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pb2(C5H3N2O2)4(H2O)6]·2H2OZ = 1
Mr = 1086.92F(000) = 516
Triclinic, P1Dx = 2.283 Mg m3
a = 7.0762 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.2967 (19) ÅCell parameters from 25 reflections
c = 12.830 (3) Åθ = 6–15°
α = 92.05 (3)°µ = 10.73 mm1
β = 105.13 (3)°T = 293 K
γ = 102.85 (3)°Plate, colourless
V = 790.4 (3) Å30.35 × 0.18 × 0.03 mm
Kuma KM-4 four-circle diffractometer3958 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.016
graphiteθmax = 30.2°, θmin = 1.7°
Profile data from ω/2θ scansh = 0→9
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = −13→12
Tmin = 0.254, Tmax = 0.762l = −18→16
4862 measured reflections3 standard reflections every 200 reflections
4512 independent reflections intensity decay: 1.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.1029P)2] where P = (Fo2 + 2Fc2)/3
4512 reflections(Δ/σ)max = 0.002
253 parametersΔρmax = 5.63 e Å3
15 restraintsΔρmin = −3.77 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pb10.11555 (3)0.048890 (18)0.675973 (14)0.02300 (9)
O110.4666 (8)0.6974 (5)0.6607 (4)0.0360 (10)
O4−0.2317 (7)0.0086 (5)0.5150 (4)0.0309 (9)
O210.2153 (8)0.1496 (5)0.8788 (4)0.0387 (11)
O10.3206 (8)−0.1283 (6)0.7946 (4)0.0395 (11)
H110.430 (8)−0.075 (11)0.838 (5)0.047*
H120.347 (11)−0.155 (10)0.736 (4)0.047*
N120.1246 (8)0.2794 (5)0.5304 (4)0.0265 (9)
N110.0425 (8)0.2525 (5)0.4237 (4)0.0280 (10)
O220.0922 (10)0.3005 (6)0.7692 (4)0.0452 (13)
O120.4408 (7)0.7751 (4)0.4972 (4)0.0331 (9)
C170.4044 (8)0.6811 (6)0.5601 (5)0.0247 (10)
C140.2716 (7)0.5309 (5)0.5091 (4)0.0208 (9)
C130.2351 (9)0.4143 (6)0.5710 (5)0.0249 (10)
H130.29160.43170.64580.030*
C150.1807 (9)0.5029 (6)0.3995 (5)0.0273 (11)
H150.19400.57690.35320.033*
C160.0682 (10)0.3600 (7)0.3606 (5)0.0309 (12)
H160.00790.33890.28630.037*
C240.2220 (9)0.3860 (6)0.9548 (5)0.0273 (11)
C270.1684 (10)0.2701 (6)0.8588 (5)0.0297 (11)
O50.7080 (10)0.0331 (7)0.9439 (4)0.0471 (13)
H510.753 (16)0.123 (4)0.975 (6)0.057*
H520.682 (16)−0.024 (7)0.993 (5)0.057*
N210.3150 (10)0.6062 (7)1.1197 (5)0.0385 (13)
N220.2595 (11)0.6394 (6)1.0184 (6)0.0391 (13)
C250.2804 (11)0.3556 (7)1.0582 (5)0.0342 (13)
H230.29070.26061.07480.041*
C230.2131 (11)0.5332 (7)0.9376 (5)0.0325 (12)
H250.17310.55710.86670.039*
C260.3247 (13)0.4707 (9)1.1396 (6)0.0396 (15)
H260.36310.45031.21150.048*
O30.4919 (9)0.1749 (7)0.7070 (4)0.0449 (12)
O2−0.1694 (9)−0.0786 (7)0.7638 (5)0.0490 (14)
H41−0.277 (8)0.082 (6)0.533 (5)0.07 (3)*
H42−0.316 (12)−0.072 (6)0.521 (10)0.07 (3)*
H310.529 (18)0.231 (10)0.661 (6)0.07 (4)*
H320.557 (16)0.215 (11)0.771 (3)0.08 (4)*
H21−0.172 (17)−0.018 (9)0.815 (6)0.05 (3)*
H22−0.259 (10)−0.160 (6)0.740 (7)0.04 (2)*
U11U22U33U12U13U23
Pb10.02442 (13)0.01967 (12)0.02294 (13)0.00112 (8)0.00730 (9)−0.00286 (7)
O110.040 (2)0.026 (2)0.032 (2)−0.0024 (18)0.0027 (19)−0.0031 (17)
O40.029 (2)0.0177 (18)0.044 (3)0.0019 (15)0.0105 (19)0.0037 (16)
O210.049 (3)0.029 (2)0.035 (2)0.010 (2)0.008 (2)−0.0061 (18)
O10.041 (3)0.039 (3)0.039 (3)0.012 (2)0.010 (2)−0.003 (2)
N120.031 (2)0.0161 (19)0.032 (2)0.0016 (17)0.012 (2)0.0006 (17)
N110.032 (2)0.0169 (19)0.032 (2)0.0005 (17)0.009 (2)−0.0032 (17)
O220.069 (4)0.039 (3)0.025 (2)0.016 (3)0.007 (2)−0.0038 (19)
O120.036 (2)0.0166 (17)0.046 (3)−0.0025 (16)0.016 (2)0.0023 (16)
C170.022 (2)0.015 (2)0.036 (3)0.0028 (17)0.009 (2)−0.0044 (18)
C140.019 (2)0.0133 (19)0.031 (3)0.0033 (16)0.0100 (19)−0.0011 (17)
C130.025 (2)0.020 (2)0.028 (3)0.0035 (19)0.006 (2)0.0020 (19)
C150.030 (3)0.019 (2)0.033 (3)0.003 (2)0.010 (2)0.006 (2)
C160.032 (3)0.024 (3)0.030 (3)0.000 (2)0.003 (2)−0.002 (2)
C240.032 (3)0.023 (2)0.026 (3)0.005 (2)0.007 (2)−0.0055 (19)
C270.038 (3)0.024 (2)0.027 (3)0.004 (2)0.011 (2)−0.006 (2)
O50.064 (4)0.042 (3)0.039 (3)0.016 (3)0.017 (3)0.001 (2)
N210.040 (3)0.037 (3)0.034 (3)0.004 (2)0.009 (2)−0.013 (2)
N220.048 (3)0.025 (2)0.042 (3)0.009 (2)0.010 (3)−0.005 (2)
C250.048 (4)0.031 (3)0.025 (3)0.013 (3)0.012 (3)0.001 (2)
C230.044 (3)0.028 (3)0.027 (3)0.013 (2)0.009 (2)0.003 (2)
C260.052 (4)0.042 (4)0.024 (3)0.010 (3)0.009 (3)−0.006 (2)
O30.043 (3)0.051 (3)0.025 (2)−0.016 (2)0.008 (2)−0.007 (2)
O20.045 (3)0.053 (3)0.042 (3)−0.012 (2)0.023 (2)−0.011 (2)
Pb1—O32.578 (6)C13—H130.9300
Pb1—O212.593 (5)C15—C161.386 (8)
Pb1—O22.638 (6)C15—H150.9300
Pb1—O222.647 (5)C16—H160.9300
Pb1—O12.688 (6)C24—C251.343 (9)
Pb1—O42.707 (5)C24—C231.406 (8)
O11—C171.242 (8)C24—C271.517 (8)
O4—H410.86 (2)O5—H510.86 (2)
O4—H420.87 (2)O5—H520.87 (2)
O21—C271.254 (8)N21—C261.308 (10)
O1—H110.86 (2)N21—N221.324 (10)
O1—H120.86 (2)N22—C231.328 (8)
N12—C131.327 (7)C25—C261.390 (9)
N12—N111.331 (7)C25—H230.9300
N11—C161.320 (8)C23—H250.9300
O22—C271.208 (8)C26—H260.9300
O12—C171.241 (7)O3—H310.86 (2)
C17—C141.514 (7)O3—H320.86 (2)
C14—C151.373 (8)O2—H210.86 (2)
C14—C131.385 (7)O2—H220.86 (2)
O3—Pb1—O2179.05 (17)N12—C13—H13118.0
O3—Pb1—O2146.72 (18)C14—C13—H13118.0
O21—Pb1—O270.88 (18)C14—C15—C16117.4 (5)
O3—Pb1—O2285.5 (2)C14—C15—H15121.3
O21—Pb1—O2249.16 (16)C16—C15—H15121.3
O2—Pb1—O2285.5 (2)N11—C16—C15123.2 (6)
O3—Pb1—O174.2 (2)N11—C16—H16118.4
O21—Pb1—O171.28 (16)C15—C16—H16118.4
O2—Pb1—O182.8 (2)C25—C24—C23117.0 (5)
O22—Pb1—O1119.77 (16)C25—C24—C27123.0 (6)
O3—Pb1—O4137.65 (16)C23—C24—C27120.1 (6)
O21—Pb1—O4132.46 (16)O22—C27—O21124.6 (6)
O2—Pb1—O475.25 (18)O22—C27—C24119.1 (6)
O22—Pb1—O496.49 (16)O21—C27—C24116.3 (6)
O1—Pb1—O4135.76 (15)H51—O5—H52107 (3)
Pb1—O4—H41100.9 (17)C26—N21—N22120.3 (6)
Pb1—O4—H42110 (8)N21—N22—C23119.1 (6)
H41—O4—H42107 (3)C24—C25—C26117.9 (6)
C27—O21—Pb193.8 (4)C24—C25—H23121.1
Pb1—O1—H11110 (8)C26—C25—H23121.1
Pb1—O1—H1287 (7)N22—C23—C24122.7 (6)
H11—O1—H12109 (3)N22—C23—H25118.7
C13—N12—N11118.9 (5)C24—C23—H25118.7
C16—N11—N12119.9 (5)N21—C26—C25123.0 (7)
C27—O22—Pb192.3 (4)N21—C26—H26118.5
O12—C17—O11126.7 (5)C25—C26—H26118.5
O12—C17—C14116.7 (5)Pb1—O3—H31120 (8)
O11—C17—C14116.6 (5)Pb1—O3—H32117 (8)
C15—C14—C13116.5 (5)H31—O3—H32109 (4)
C15—C14—C17122.0 (5)Pb1—O2—H21108 (7)
C13—C14—C17121.5 (5)Pb1—O2—H22127 (6)
N12—C13—C14124.0 (5)H21—O2—H22124 (10)
D—H···AD—HH···AD···AD—H···A
O4—H41···O12i0.86 (2)1.93 (2)2.736 (6)154 (4)
O4—H42···O12ii0.87 (2)1.92 (4)2.754 (6)161 (11)
O1—H11···O50.86 (2)2.08 (3)2.943 (9)174 (10)
O1—H12···O11iii0.86 (2)2.09 (6)2.849 (7)146 (9)
O5—H51···N22iv0.86 (2)2.23 (5)3.013 (8)151 (9)
O5—H52···O21v0.87 (2)2.12 (6)2.897 (8)149 (10)
O3—H31···O12vi0.86 (2)2.09 (7)2.819 (7)142 (10)
O3—H32···N21iv0.86 (2)2.01 (6)2.794 (7)151 (10)
O2—H21···O5vii0.86 (2)2.13 (5)2.906 (8)150 (9)
O2—H22···O11ii0.86 (2)2.07 (4)2.891 (7)159 (9)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O12i0.86 (2)1.93 (2)2.736 (6)154 (4)
O4—H42⋯O12ii0.87 (2)1.92 (4)2.754 (6)161 (11)
O1—H11⋯O50.86 (2)2.08 (3)2.943 (9)174 (10)
O1—H12⋯O11iii0.86 (2)2.09 (6)2.849 (7)146 (9)
O5—H51⋯N22iv0.86 (2)2.23 (5)3.013 (8)151 (9)
O5—H52⋯O21v0.87 (2)2.12 (6)2.897 (8)149 (10)
O3—H31⋯O12vi0.86 (2)2.09 (7)2.819 (7)142 (10)
O3—H32⋯N21iv0.86 (2)2.01 (6)2.794 (7)151 (10)
O2—H21⋯O5vii0.86 (2)2.13 (5)2.906 (8)150 (9)
O2—H22⋯O11ii0.86 (2)2.07 (4)2.891 (7)159 (9)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Bis(μ-pyridazine-3-carboxyl-ato-κO:O')bis-[aqua-dioxido(pyridazine-3-carboxyl-ato-κN,O)uranium(VI)] dihydrate.

Authors:  Janusz Leciejewicz; Wojciech Starosta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17

3.  Hydrazinediium bis-(6-carboxy-pyridazine-3-carboxyl-ate) dihydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-16
  3 in total
  4 in total

1.  Poly[aqua-(μ-pyrazine-2-carboxyl-ato-κN,O:O)(μ-pyrazine-2-carboxyl-ato-κN,O:O')lead(II)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-17

2.  Poly[aqua-(μ(3)-pyridazine-4-carboxyl-ato-κO:O:O')lithium].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-12

3.  trans-Tetra-aqua-bis-(pyridazine-4-car-box-yl-ato-κO)magnesium(II) dihydrate.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-09

4.  catena-Poly[lead(II)-bis-(μ(2)-pyridazine-3-carboxyl-ato-κN,O:O)].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-23
  4 in total

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