Literature DB >> 21741238

Evaluation of FKBP and DHFR based destabilizing domains in Saccharomyces cerevisiae.

Rishi Rakhit1, Sarah R Edwards, Mari Iwamoto, Thomas J Wandless.   

Abstract

Two orthogonal destabilizing domains have been developed based on mutants of human FKBP12 as well as bacterial DHFR and these engineered domains have been used to control protein concentration in a variety of contexts in vitro and in vivo. FKBP12 based destabilizing domains cannot be rescued in the yeast Saccharomyces cerevisiae; ecDHFR based destabilizing domains are not degraded as efficiently in S. cerevisiae as in mammalian cells or Plasmodium, but provide a starting point for the development of domains with increased signal-to-noise in S. cerevisiae.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21741238      PMCID: PMC3156383          DOI: 10.1016/j.bmcl.2011.06.006

Source DB:  PubMed          Journal:  Bioorg Med Chem Lett        ISSN: 0960-894X            Impact factor:   2.823


  15 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

3.  A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules.

Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

4.  A general chemical method to regulate protein stability in the mammalian central nervous system.

Authors:  Mari Iwamoto; Tomas Björklund; Cecilia Lundberg; Deniz Kirik; Thomas J Wandless
Journal:  Chem Biol       Date:  2010-09-24

5.  An FKBP destabilization domain modulates protein levels in Plasmodium falciparum.

Authors:  Christopher M Armstrong; Daniel E Goldberg
Journal:  Nat Methods       Date:  2007-11-11       Impact factor: 28.547

6.  Recent progress with FKBP-derived destabilizing domains.

Authors:  Bernard W Chu; Laura A Banaszynski; Ling-chun Chen; Thomas J Wandless
Journal:  Bioorg Med Chem Lett       Date:  2008-09-12       Impact factor: 2.823

7.  Functional profiling of the Saccharomyces cerevisiae genome.

Authors:  Guri Giaever; Angela M Chu; Li Ni; Carla Connelly; Linda Riles; Steeve Véronneau; Sally Dow; Ankuta Lucau-Danila; Keith Anderson; Bruno André; Adam P Arkin; Anna Astromoff; Mohamed El-Bakkoury; Rhonda Bangham; Rocio Benito; Sophie Brachat; Stefano Campanaro; Matt Curtiss; Karen Davis; Adam Deutschbauer; Karl-Dieter Entian; Patrick Flaherty; Francoise Foury; David J Garfinkel; Mark Gerstein; Deanna Gotte; Ulrich Güldener; Johannes H Hegemann; Svenja Hempel; Zelek Herman; Daniel F Jaramillo; Diane E Kelly; Steven L Kelly; Peter Kötter; Darlene LaBonte; David C Lamb; Ning Lan; Hong Liang; Hong Liao; Lucy Liu; Chuanyun Luo; Marc Lussier; Rong Mao; Patrice Menard; Siew Loon Ooi; Jose L Revuelta; Christopher J Roberts; Matthias Rose; Petra Ross-Macdonald; Bart Scherens; Greg Schimmack; Brenda Shafer; Daniel D Shoemaker; Sharon Sookhai-Mahadeo; Reginald K Storms; Jeffrey N Strathern; Giorgio Valle; Marleen Voet; Guido Volckaert; Ching-yun Wang; Teresa R Ward; Julie Wilhelmy; Elizabeth A Winzeler; Yonghong Yang; Grace Yen; Elaine Youngman; Kexin Yu; Howard Bussey; Jef D Boeke; Michael Snyder; Peter Philippsen; Ronald W Davis; Mark Johnston
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

8.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

9.  Heat-inducible degron: a method for constructing temperature-sensitive mutants.

Authors:  R J Dohmen; P Wu; A Varshavsky
Journal:  Science       Date:  1994-03-04       Impact factor: 47.728

10.  Chemical control of protein stability and function in living mice.

Authors:  Laura A Banaszynski; Mark A Sellmyer; Christopher H Contag; Thomas J Wandless; Steve H Thorne
Journal:  Nat Med       Date:  2008-09-28       Impact factor: 53.440

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  5 in total

Review 1.  Frontiers of protein expression control with conditional degrons.

Authors:  Masato T Kanemaki
Journal:  Pflugers Arch       Date:  2012-12-28       Impact factor: 3.657

2.  Destabilization domain approach adapted for regulated protein expression in the protozoan parasite Entamoeba histolytica.

Authors:  Yuk-Chien Liu; Upinder Singh
Journal:  Int J Parasitol       Date:  2014-06-11       Impact factor: 3.981

Review 3.  Chemical biology strategies for posttranslational control of protein function.

Authors:  Rishi Rakhit; Raul Navarro; Thomas J Wandless
Journal:  Chem Biol       Date:  2014-09-18

4.  A general strategy to construct small molecule biosensors in eukaryotes.

Authors:  Justin Feng; Benjamin W Jester; Christine E Tinberg; Daniel J Mandell; Mauricio S Antunes; Raj Chari; Kevin J Morey; Xavier Rios; June I Medford; George M Church; Stanley Fields; David Baker
Journal:  Elife       Date:  2015-12-29       Impact factor: 8.140

5.  Utility of the DHFR-based destabilizing domain across mouse models of retinal degeneration and aging.

Authors:  Hui Peng; Prerana Ramadurgum; DaNae R Woodard; Steffi Daniel; Emi Nakahara; Marian Renwick; Bogale Aredo; Shyamtanu Datta; Bo Chen; Rafael Ufret-Vincenty; John D Hulleman
Journal:  iScience       Date:  2022-04-06
  5 in total

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