Literature DB >> 23271452

Frontiers of protein expression control with conditional degrons.

Masato T Kanemaki1.   

Abstract

It is useful to artificially control the expression levels of a protein of interest (POI), not only for its characterization in vivo, but also for the modulation of biological pathways. Overexpression of a POI is relatively easy because it is possible to drive its expression from a transgene encoding the POI under the control of a strong promoter. However, it is more challenging to reduce or deplete the expression of a POI. A protein domain called "degron", which induces rapid proteolysis by the proteasome, can be used for this purpose. Degron-based technologies for the conditional depletion of POI--degron fusion proteins have been developed by exploiting various pathways leading to proteasomal degradation. Compared with other depletion technologies that control the expression levels of POIs at the DNA or mRNA levels, these protein-depletion approaches are advantageous in terms of specificity, reversibility, and the time required for depletion. Current conditional degron-based technologies are described and discussed.

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Year:  2012        PMID: 23271452     DOI: 10.1007/s00424-012-1203-y

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  45 in total

1.  Harnessing the ubiquitination machinery to target the degradation of specific cellular proteins.

Authors:  P Zhou; R Bogacki; L McReynolds; P M Howley
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

2.  Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.

Authors:  M Gossen; H Bujard
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

3.  In vivo protein labeling with trimethoprim conjugates: a flexible chemical tag.

Authors:  Lawrence W Miller; Yunfei Cai; Michael P Sheetz; Virginia W Cornish
Journal:  Nat Methods       Date:  2005-04       Impact factor: 28.547

Review 4.  Adding value to fusion proteins through covalent labelling.

Authors:  Thomas Gronemeyer; Guillaume Godin; Kai Johnsson
Journal:  Curr Opin Biotechnol       Date:  2005-08       Impact factor: 9.740

5.  Rapid control of protein level in the apicomplexan Toxoplasma gondii.

Authors:  Angelika Herm-Götz; Carolina Agop-Nersesian; Sylvia Münter; Joshua S Grimley; Thomas J Wandless; Friedrich Frischknecht; Markus Meissner
Journal:  Nat Methods       Date:  2007-11-11       Impact factor: 28.547

6.  A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules.

Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

7.  Rapid depletion of budding yeast proteins by fusion to a heat-inducible degron.

Authors:  Alberto Sanchez-Diaz; Masato Kanemaki; Vanessa Marchesi; Karim Labib
Journal:  Sci STKE       Date:  2004-03-02

8.  Chemical control of protein stability and function in living mice.

Authors:  Laura A Banaszynski; Mark A Sellmyer; Christopher H Contag; Thomas J Wandless; Steve H Thorne
Journal:  Nat Med       Date:  2008-09-28       Impact factor: 53.440

9.  Chemical genetic control of protein levels: selective in vivo targeted degradation.

Authors:  John S Schneekloth; Fabiana N Fonseca; Michael Koldobskiy; Amit Mandal; Raymond Deshaies; Kathleen Sakamoto; Craig M Crews
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

10.  Targeted protein depletion in Saccharomyces cerevisiae by activation of a bidirectional degron.

Authors:  Marc Jungbluth; Christian Renicke; Christof Taxis
Journal:  BMC Syst Biol       Date:  2010-12-29
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  7 in total

1.  Regulated protein depletion by the auxin-inducible degradation system in Drosophila melanogaster.

Authors:  Martina Trost; Ariane C Blattner; Christian F Lehner
Journal:  Fly (Austin)       Date:  2016-03-24       Impact factor: 2.160

2.  The auxin-inducible degradation system enables conditional PERIOD protein depletion in the nervous system of Drosophila melanogaster.

Authors:  Wenfeng Chen; Michelle Werdann; Yong Zhang
Journal:  FEBS J       Date:  2018-10-25       Impact factor: 5.542

3.  Selectable one-step PCR-mediated integration of a degron for rapid depletion of endogenous human proteins.

Authors:  Ryan M Sheridan; David L Bentley
Journal:  Biotechniques       Date:  2016-02-01       Impact factor: 1.993

4.  Remote and reversible inhibition of neurons and circuits by small molecule induced potassium channel stabilization.

Authors:  Eva Auffenberg; Angela Jurik; Corinna Mattusch; Rainer Stoffel; Andreas Genewsky; Christian Namendorf; Roland M Schmid; Gerhard Rammes; Martin Biel; Manfred Uhr; Sven Moosmang; Stylianos Michalakis; Carsten T Wotjak; Christoph K Thoeringer
Journal:  Sci Rep       Date:  2016-01-13       Impact factor: 4.379

5.  Functional analysis after rapid degradation of condensins and 3D-EM reveals chromatin volume is uncoupled from chromosome architecture in mitosis.

Authors:  Kumiko Samejima; Daniel G Booth; Hiromi Ogawa; James R Paulson; Linfeng Xie; Cara A Watson; Melpomeni Platani; Masato T Kanemaki; William C Earnshaw
Journal:  J Cell Sci       Date:  2018-02-22       Impact factor: 5.285

6.  Peptide aptamers define distinct EB1- and EB3-binding motifs and interfere with microtubule dynamics.

Authors:  Karolina Leśniewska; Emma Warbrick; Hiroyuki Ohkura
Journal:  Mol Biol Cell       Date:  2014-01-29       Impact factor: 4.138

7.  Dual regulation of cytoplasmic and mitochondrial acetyl-CoA utilization for improved isoprene production in Saccharomyces cerevisiae.

Authors:  Xiaomei Lv; Fan Wang; Pingping Zhou; Lidan Ye; Wenping Xie; Haoming Xu; Hongwei Yu
Journal:  Nat Commun       Date:  2016-09-21       Impact factor: 14.919

  7 in total

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