Literature DB >> 25237866

Chemical biology strategies for posttranslational control of protein function.

Rishi Rakhit1, Raul Navarro1, Thomas J Wandless2.   

Abstract

A common strategy to understand a biological system is to selectively perturb it and observe its response. Although technologies now exist to manipulate cellular systems at the genetic and transcript level, the direct manipulation of functions at the protein level can offer significant advantages in precision, speed, and reversibility. Combining the specificity of genetic manipulation and the spatiotemporal resolution of light- and small molecule-based approaches now allows exquisite control over biological systems to subtly perturb a system of interest in vitro and in vivo. Conditional perturbation mechanisms may be broadly characterized by change in intracellular localization, intramolecular activation, or degradation of a protein-of-interest. Here we review recent advances in technologies for conditional regulation of protein function and suggest further areas of potential development.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25237866      PMCID: PMC4174368          DOI: 10.1016/j.chembiol.2014.08.011

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  106 in total

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Authors:  Yi Gong; Titia de Lange
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2.  Microfluidic local perfusion chambers for the visualization and manipulation of synapses.

Authors:  Anne M Taylor; Daniela C Dieterich; Hiroshi T Ito; Sally A Kim; Erin M Schuman
Journal:  Neuron       Date:  2010-04-15       Impact factor: 17.173

3.  Chemical control of FGF-2 release for promoting calvarial healing with adipose stem cells.

Authors:  Matthew D Kwan; Mark A Sellmyer; Natalina Quarto; Andrew M Ho; Thomas J Wandless; Michael T Longaker
Journal:  J Biol Chem       Date:  2011-01-24       Impact factor: 5.157

4.  A plant-like kinase in Plasmodium falciparum regulates parasite egress from erythrocytes.

Authors:  Jeffrey D Dvorin; Derek C Martyn; Saurabh D Patel; Joshua S Grimley; Christine R Collins; Christine S Hopp; A Taylor Bright; Scott Westenberger; Elizabeth Winzeler; Michael J Blackman; David A Baker; Thomas J Wandless; Manoj T Duraisingh
Journal:  Science       Date:  2010-05-14       Impact factor: 47.728

5.  A general chemical method to regulate protein stability in the mammalian central nervous system.

Authors:  Mari Iwamoto; Tomas Björklund; Cecilia Lundberg; Deniz Kirik; Thomas J Wandless
Journal:  Chem Biol       Date:  2010-09-24

Review 6.  Abscisic acid: emergence of a core signaling network.

Authors:  Sean R Cutler; Pedro L Rodriguez; Ruth R Finkelstein; Suzanne R Abrams
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

7.  Engineering the ABA plant stress pathway for regulation of induced proximity.

Authors:  Fu-Sen Liang; Wen Qi Ho; Gerald R Crabtree
Journal:  Sci Signal       Date:  2011-03-15       Impact factor: 8.192

8.  Rapid inactivation of proteins by rapamycin-induced rerouting to mitochondria.

Authors:  Margaret S Robinson; Daniela A Sahlender; Samuel D Foster
Journal:  Dev Cell       Date:  2010-02-16       Impact factor: 12.270

9.  Engineered allosteric activation of kinases in living cells.

Authors:  Andrei V Karginov; Feng Ding; Pradeep Kota; Nikolay V Dokholyan; Klaus M Hahn
Journal:  Nat Biotechnol       Date:  2010-06-27       Impact factor: 54.908

10.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
Journal:  Nat Methods       Date:  2010-10-31       Impact factor: 28.547

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  36 in total

1.  Methods: A small-molecule SMASh hit.

Authors:  Jeffrey Hannah; Pengbo Zhou
Journal:  Nat Chem Biol       Date:  2015-09       Impact factor: 15.040

Review 2.  Development and application of bond cleavage reactions in bioorthogonal chemistry.

Authors:  Jie Li; Peng R Chen
Journal:  Nat Chem Biol       Date:  2016-03       Impact factor: 15.040

3.  SapTrap, a Toolkit for High-Throughput CRISPR/Cas9 Gene Modification in Caenorhabditis elegans.

Authors:  Matthew L Schwartz; Erik M Jorgensen
Journal:  Genetics       Date:  2016-02-02       Impact factor: 4.562

4.  High-throughput microfluidics to control and measure signaling dynamics in single yeast cells.

Authors:  Anders S Hansen; Nan Hao; Erin K O'Shea
Journal:  Nat Protoc       Date:  2015-07-09       Impact factor: 13.491

5.  Peptidic degron for IMiD-induced degradation of heterologous proteins.

Authors:  Vidyasagar Koduri; Samuel K McBrayer; Ella Liberzon; Adam C Wang; Kimberly J Briggs; Hyejin Cho; William G Kaelin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-25       Impact factor: 11.205

6.  A Novel Destabilizing Domain Based on a Small-Molecule Dependent Fluorophore.

Authors:  Raul Navarro; Ling-Chun Chen; Rishi Rakhit; Thomas J Wandless
Journal:  ACS Chem Biol       Date:  2016-06-06       Impact factor: 5.100

7.  A Chemically Disrupted Proximity System for Controlling Dynamic Cellular Processes.

Authors:  Daniel Cunningham-Bryant; Emily M Dieter; Glenna W Foight; John C Rose; Dana E Loutey; Dustin J Maly
Journal:  J Am Chem Soc       Date:  2019-02-14       Impact factor: 15.419

8.  Allosteric activation of membrane-bound glutamate receptors using coordination chemistry within living cells.

Authors:  Shigeki Kiyonaka; Ryou Kubota; Yukiko Michibata; Masayoshi Sakakura; Hideo Takahashi; Tomohiro Numata; Ryuji Inoue; Michisuke Yuzaki; Itaru Hamachi
Journal:  Nat Chem       Date:  2016-06-27       Impact factor: 24.427

Review 9.  Precision Control of CRISPR-Cas9 Using Small Molecules and Light.

Authors:  Soumyashree A Gangopadhyay; Kurt J Cox; Debasish Manna; Donghyun Lim; Basudeb Maji; Qingxuan Zhou; Amit Choudhary
Journal:  Biochemistry       Date:  2019-01-22       Impact factor: 3.162

10.  Cycloisomerization of Olefins in Water.

Authors:  Jeishla L M Matos; Samantha A Green; Yuge Chun; Vuong Q Dang; Russell G Dushin; Paul Richardson; Jason S Chen; David W Piotrowski; Brian M Paegel; Ryan A Shenvi
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-28       Impact factor: 15.336

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