Literature DB >> 24929134

Destabilization domain approach adapted for regulated protein expression in the protozoan parasite Entamoeba histolytica.

Yuk-Chien Liu1, Upinder Singh2.   

Abstract

A plethora of information has been gained by sequencing the genome of the human parasite Entamoeba histolytica, however a lack of robust genetic tools hampers experimental elucidation of gene functions. We adapted the destabilization domain approach for modulation of protein levels in E. histolytica using the destabilization domains of FK506 binding protein (ddFKBP) and dihydrofolate reductase (ddDHFR), respectively. In our studies, the ddFKBP appears to be more tightly regulated than ddDHFR, with minimal detectable protein in trophozoites in the absence of the stabilizing compound. The on- and off-rate kinetics for ddFKBP were rapid, with stabilization and degradation within 3h of addition or removal of stabilizing compound, respectively. The kinetics for ddDHFR was different, with rapid stabilization (within 3h of stabilizing compound being added) but much slower degradation (protein not destabilized until 24h after compound removal). Furthermore, we demonstrated that for the ddFKBP, the standard stabilizing compound Shield-1 could be effectively replaced by two cheaper alternatives (rapamycin and FK506), indicating that the more cost-effective alternatives are viable options for use with E. histolytica. Thus, the destabilization domain approach represents a powerful method to study protein functions in E. histolytica and adds to the catalog of genetic tools that could be used to study this important human pathogen.
Copyright © 2014 Australian Society for Parasitology Inc. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Amebiasis; Destabilized protein; Enteric pathogen; Inducible expression; Protein degradation

Mesh:

Substances:

Year:  2014        PMID: 24929134      PMCID: PMC4138259          DOI: 10.1016/j.ijpara.2014.05.002

Source DB:  PubMed          Journal:  Int J Parasitol        ISSN: 0020-7519            Impact factor:   3.981


  33 in total

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3.  Tetracycline-controlled gene expression in Entamoeba histolytica.

Authors:  L Hamann; H Buss; E Tannich
Journal:  Mol Biochem Parasitol       Date:  1997-01       Impact factor: 1.759

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Authors:  R López-Revilla; R Gómez
Journal:  Exp Parasitol       Date:  1978-04       Impact factor: 2.011

5.  The genome of the protist parasite Entamoeba histolytica.

Authors:  Brendan Loftus; Iain Anderson; Rob Davies; U Cecilia M Alsmark; John Samuelson; Paolo Amedeo; Paola Roncaglia; Matt Berriman; Robert P Hirt; Barbara J Mann; Tomo Nozaki; Bernard Suh; Mihai Pop; Michael Duchene; John Ackers; Egbert Tannich; Matthias Leippe; Margit Hofer; Iris Bruchhaus; Ute Willhoeft; Alok Bhattacharya; Tracey Chillingworth; Carol Churcher; Zahra Hance; Barbara Harris; David Harris; Kay Jagels; Sharon Moule; Karen Mungall; Doug Ormond; Rob Squares; Sally Whitehead; Michael A Quail; Ester Rabbinowitsch; Halina Norbertczak; Claire Price; Zheng Wang; Nancy Guillén; Carol Gilchrist; Suzanne E Stroup; Sudha Bhattacharya; Anuradha Lohia; Peter G Foster; Thomas Sicheritz-Ponten; Christian Weber; Upinder Singh; Chandrama Mukherjee; Najib M El-Sayed; William A Petri; C Graham Clark; T Martin Embley; Bart Barrell; Claire M Fraser; Neil Hall
Journal:  Nature       Date:  2005-02-24       Impact factor: 49.962

6.  A general method for conditional regulation of protein stability in living animals.

Authors:  Mark A Sellmyer; Steve H Thorne; Laura A Banaszynski; Christopher H Contag; Thomas J Wandless
Journal:  Cold Spring Harb Protoc       Date:  2009-03

7.  Asparagine repeat function in a Plasmodium falciparum protein assessed via a regulatable fluorescent affinity tag.

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8.  Downregulation of an Entamoeba histolytica rhomboid protease reveals roles in regulating parasite adhesion and phagocytosis.

Authors:  Leigh A Baxt; Elena Rastew; Rivka Bracha; David Mirelman; Upinder Singh
Journal:  Eukaryot Cell       Date:  2010-06-25

9.  A rapid, reversible, and tunable method to regulate protein function in living cells using synthetic small molecules.

Authors:  Laura A Banaszynski; Ling-Chun Chen; Lystranne A Maynard-Smith; A G Lisa Ooi; Thomas J Wandless
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

Review 10.  Progress and prospects of gene inactivation in Entamoeba histolytica.

Authors:  Mona Abed; Serge Ankri
Journal:  Exp Parasitol       Date:  2007-08-22       Impact factor: 2.011

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  6 in total

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2.  Development of a CRISPR/Cas9 system in Entamoeba histolytica: proof of concept.

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3.  Tunable Protein Stabilization In Vivo Mediated by Shield-1 in Transgenic Medaka.

Authors:  Alexander Froschauer; Lisa Kube; Alexandra Kegler; Christiane Rieger; Herwig O Gutzeit
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

4.  Functional Characterization of Entamoeba histolytica Argonaute Proteins Reveals a Repetitive DR-Rich Motif Region That Controls Nuclear Localization.

Authors:  Hanbang Zhang; Vy Tran; Dipak Manna; Gretchen Ehrenkaufer; Upinder Singh
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5.  StaPLs: versatile genetically encoded modules for engineering drug-inducible proteins.

Authors:  Conor L Jacobs; Ryan K Badiee; Michael Z Lin
Journal:  Nat Methods       Date:  2018-07-02       Impact factor: 28.547

6.  A Conditional Protein Degradation System To Study Essential Gene Function in Cryptosporidium parvum.

Authors:  Hadi H Choudhary; Maria G Nava; Brina E Gartlan; Savannah Rose; Sumiti Vinayak
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  6 in total

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