Literature DB >> 21738221

Multilayer checkpoints for microRNA authenticity during RISC assembly.

Tomoko Kawamata1, Mayuko Yoda, Yukihide Tomari.   

Abstract

MicroRNAs (miRNAs) function through the RNA-induced silencing complex (RISC), which contains an Argonaute (Ago) protein at the core. RISC assembly follows a two-step pathway: miRNA/miRNA* duplex loading into Ago, and separation of the two strands within Ago. Here we show that the 5' phosphate of the miRNA strand is essential for duplex loading into Ago, whereas the preferred 5' nucleotide of the miRNA strand and the base-pairing status in the seed region and the middle of the 3' region function as additive anchors to Ago. Consequently, the miRNA authenticity is inspected at multiple steps during RISC assembly.

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Year:  2011        PMID: 21738221      PMCID: PMC3166454          DOI: 10.1038/embor.2011.128

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  26 in total

1.  Asymmetry in the assembly of the RNAi enzyme complex.

Authors:  Dianne S Schwarz; György Hutvágner; Tingting Du; Zuoshang Xu; Neil Aronin; Phillip D Zamore
Journal:  Cell       Date:  2003-10-17       Impact factor: 41.582

2.  Argonaute2 is the catalytic engine of mammalian RNAi.

Authors:  Jidong Liu; Michelle A Carmell; Fabiola V Rivas; Carolyn G Marsden; J Michael Thomson; Ji-Joon Song; Scott M Hammond; Leemor Joshua-Tor; Gregory J Hannon
Journal:  Science       Date:  2004-07-29       Impact factor: 47.728

3.  A protein sensor for siRNA asymmetry.

Authors:  Yukihide Tomari; Christian Matranga; Benjamin Haley; Natalia Martinez; Phillip D Zamore
Journal:  Science       Date:  2004-11-19       Impact factor: 47.728

4.  Structural basis for 5'-end-specific recognition of guide RNA by the A. fulgidus Piwi protein.

Authors:  Jin-Biao Ma; Yu-Ren Yuan; Gunter Meister; Yi Pei; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

5.  Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex.

Authors:  James S Parker; S Mark Roe; David Barford
Journal:  Nature       Date:  2005-03-31       Impact factor: 49.962

6.  Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs.

Authors:  Gunter Meister; Markus Landthaler; Agnieszka Patkaniowska; Yair Dorsett; Grace Teng; Thomas Tuschl
Journal:  Mol Cell       Date:  2004-07-23       Impact factor: 17.970

7.  Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways.

Authors:  Katsutomo Okamura; Akira Ishizuka; Haruhiko Siomi; Mikiko C Siomi
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

8.  In vitro analysis of RNA interference in Drosophila melanogaster.

Authors:  Benjamin Haley; Guiliang Tang; Phillip D Zamore
Journal:  Methods       Date:  2003-08       Impact factor: 3.608

9.  Structure of the guide-strand-containing argonaute silencing complex.

Authors:  Yanli Wang; Gang Sheng; Stefan Juranek; Thomas Tuschl; Dinshaw J Patel
Journal:  Nature       Date:  2008-08-27       Impact factor: 49.962

10.  Sorting of Drosophila small silencing RNAs.

Authors:  Yukihide Tomari; Tingting Du; Phillip D Zamore
Journal:  Cell       Date:  2007-07-27       Impact factor: 41.582

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  33 in total

1.  The N domain of Argonaute drives duplex unwinding during RISC assembly.

Authors:  Pieter Bas Kwak; Yukihide Tomari
Journal:  Nat Struct Mol Biol       Date:  2012-01-10       Impact factor: 15.369

2.  Plant secondary siRNA production determined by microRNA-duplex structure.

Authors:  Pablo A Manavella; Daniel Koenig; Detlef Weigel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

3.  Precursor microRNA-programmed silencing complex assembly pathways in mammals.

Authors:  Xuhang Liu; Dong-Yan Jin; Michael T McManus; Zissimos Mourelatos
Journal:  Mol Cell       Date:  2012-04-12       Impact factor: 17.970

4.  Terminal Duplex Stability and Nucleotide Identity Differentially Control siRNA Loading and Activity in RNA Interference.

Authors:  Phillip A Angart; Rebecca J Carlson; Kwasi Adu-Berchie; S Patrick Walton
Journal:  Nucleic Acid Ther       Date:  2016-07-11       Impact factor: 5.486

Review 5.  Are microRNAs the Molecular Link Between Metabolic Syndrome and Alzheimer's Disease?

Authors:  Juan F Codocedo; Juvenal A Ríos; Juan A Godoy; Nibaldo C Inestrosa
Journal:  Mol Neurobiol       Date:  2015-05-15       Impact factor: 5.590

Review 6.  Structural Foundations of RNA Silencing by Argonaute.

Authors:  Jessica Sheu-Gruttadauria; Ian J MacRae
Journal:  J Mol Biol       Date:  2017-07-27       Impact factor: 5.469

7.  Human RNA methyltransferase BCDIN3D regulates microRNA processing.

Authors:  Blerta Xhemalce; Samuel C Robson; Tony Kouzarides
Journal:  Cell       Date:  2012-10-12       Impact factor: 41.582

Review 8.  Animal Models to Study MicroRNA Function.

Authors:  Arpita S Pal; Andrea L Kasinski
Journal:  Adv Cancer Res       Date:  2017-08-08       Impact factor: 6.242

9.  Highly complementary target RNAs promote release of guide RNAs from human Argonaute2.

Authors:  Nabanita De; Lisa Young; Pick-Wei Lau; Nicole-Claudia Meisner; David V Morrissey; Ian J MacRae
Journal:  Mol Cell       Date:  2013-05-09       Impact factor: 17.970

10.  Arabidopsis Argonaute MID domains use their nucleotide specificity loop to sort small RNAs.

Authors:  Filipp Frank; Jesse Hauver; Nahum Sonenberg; Bhushan Nagar
Journal:  EMBO J       Date:  2012-07-31       Impact factor: 11.598

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