Literature DB >> 21736903

ClpXP, an ATP-powered unfolding and protein-degradation machine.

Tania A Baker1, Robert T Sauer.   

Abstract

ClpXP is a AAA+ protease that uses the energy of ATP binding and hydrolysis to perform mechanical work during targeted protein degradation within cells. ClpXP consists of hexamers of a AAA+ ATPase (ClpX) and a tetradecameric peptidase (ClpP). Asymmetric ClpX hexamers bind unstructured peptide tags in protein substrates, unfold stable tertiary structure in the substrate, and then translocate the unfolded polypeptide chain into an internal proteolytic compartment in ClpP. Here, we review our present understanding of ClpXP structure and function, as revealed by two decades of biochemical and biophysical studies.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21736903      PMCID: PMC3209554          DOI: 10.1016/j.bbamcr.2011.06.007

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  111 in total

1.  SspB delivery of substrates for ClpXP proteolysis probed by the design of improved degradation tags.

Authors:  Greg L Hersch; Tania A Baker; Robert T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-05       Impact factor: 11.205

2.  Modulating substrate choice: the SspB adaptor delivers a regulator of the extracytoplasmic-stress response to the AAA+ protease ClpXP for degradation.

Authors:  Julia M Flynn; Igor Levchenko; Robert T Sauer; Tania A Baker
Journal:  Genes Dev       Date:  2004-09-15       Impact factor: 11.361

3.  Communication between ClpX and ClpP during substrate processing and degradation.

Authors:  Shilpa A Joshi; Greg L Hersch; Tania A Baker; Robert T Sauer
Journal:  Nat Struct Mol Biol       Date:  2004-04-04       Impact factor: 15.369

Review 4.  AAA+ proteases: ATP-fueled machines of protein destruction.

Authors:  Robert T Sauer; Tania A Baker
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

5.  ClpX(P) generates mechanical force to unfold and translocate its protein substrates.

Authors:  Rodrigo A Maillard; Gheorghe Chistol; Maya Sen; Maurizio Righini; Jiongyi Tan; Christian M Kaiser; Courtney Hodges; Andreas Martin; Carlos Bustamante
Journal:  Cell       Date:  2011-04-29       Impact factor: 41.582

6.  Inducible protein degradation in Bacillus subtilis using heterologous peptide tags and adaptor proteins to target substrates to the protease ClpXP.

Authors:  Kevin L Griffith; Alan D Grossman
Journal:  Mol Microbiol       Date:  2008-09-22       Impact factor: 3.501

7.  A multiple-component, ATP-dependent protease from Escherichia coli.

Authors:  Y Katayama-Fujimura; S Gottesman; M R Maurizi
Journal:  J Biol Chem       Date:  1987-04-05       Impact factor: 5.157

8.  Turned on for degradation: ATPase-independent degradation by ClpP.

Authors:  Maria C Bewley; Vito Graziano; Kathleen Griffin; John M Flanagan
Journal:  J Struct Biol       Date:  2008-11-11       Impact factor: 2.867

Review 9.  Sculpting the proteome with AAA(+) proteases and disassembly machines.

Authors:  Robert T Sauer; Daniel N Bolon; Briana M Burton; Randall E Burton; Julia M Flynn; Robert A Grant; Greg L Hersch; Shilpa A Joshi; Jon A Kenniston; Igor Levchenko; Saskia B Neher; Elizabeth S C Oakes; Samia M Siddiqui; David A Wah; Tania A Baker
Journal:  Cell       Date:  2004-10-01       Impact factor: 41.582

10.  Pore loops of the AAA+ ClpX machine grip substrates to drive translocation and unfolding.

Authors:  Andreas Martin; Tania A Baker; Robert T Sauer
Journal:  Nat Struct Mol Biol       Date:  2008-10-19       Impact factor: 15.369

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  183 in total

1.  RpoS proteolysis is controlled directly by ATP levels in Escherichia coli.

Authors:  Celeste N Peterson; Igor Levchenko; Joshua D Rabinowitz; Tania A Baker; Thomas J Silhavy
Journal:  Genes Dev       Date:  2012-03-15       Impact factor: 11.361

2.  Structural characterization of full-length NSF and 20S particles.

Authors:  Lei-Fu Chang; Song Chen; Cui-Cui Liu; Xijiang Pan; Jiansen Jiang; Xiao-Chen Bai; Xin Xie; Hong-Wei Wang; Sen-Fang Sui
Journal:  Nat Struct Mol Biol       Date:  2012-02-05       Impact factor: 15.369

3.  Conformational Changes in the Endosomal Sorting Complex Required for the Transport III Subunit Ist1 Lead to Distinct Modes of ATPase Vps4 Regulation.

Authors:  Jason Tan; Brian A Davies; Johanna A Payne; Linda M Benson; David J Katzmann
Journal:  J Biol Chem       Date:  2015-10-29       Impact factor: 5.157

4.  Initial Characterization of the Two ClpP Paralogs of Chlamydia trachomatis Suggests Unique Functionality for Each.

Authors:  Nicholas A Wood; Krystal Y Chung; Amanda M Blocker; Nathalia Rodrigues de Almeida; Martin Conda-Sheridan; Derek J Fisher; Scot P Ouellette
Journal:  J Bacteriol       Date:  2018-12-20       Impact factor: 3.490

5.  A Quality-Control Mechanism Removes Unfit Cells from a Population of Sporulating Bacteria.

Authors:  Irene S Tan; Cordelia A Weiss; David L Popham; Kumaran S Ramamurthi
Journal:  Dev Cell       Date:  2015-09-17       Impact factor: 12.270

6.  Substrate-translocating loops regulate mechanochemical coupling and power production in AAA+ protease ClpXP.

Authors:  Piere Rodriguez-Aliaga; Luis Ramirez; Frank Kim; Carlos Bustamante; Andreas Martin
Journal:  Nat Struct Mol Biol       Date:  2016-09-26       Impact factor: 15.369

Review 7.  Comparing protein folding in vitro and in vivo: foldability meets the fitness challenge.

Authors:  Karan S Hingorani; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2014-01-14       Impact factor: 6.809

8.  Antibacterial activity of and resistance to small molecule inhibitors of the ClpP peptidase.

Authors:  Corey L Compton; Karl R Schmitz; Robert T Sauer; Jason K Sello
Journal:  ACS Chem Biol       Date:  2013-10-04       Impact factor: 5.100

9.  Specificity Distorted: Chemical Induction of Biological Paracatalysis.

Authors:  Brian P Callahan; Daniel A Ciulla; Andrew G Wagner; Zihan Xu; Xiaoyu Zhang
Journal:  Biochemistry       Date:  2020-09-15       Impact factor: 3.162

Review 10.  Regulated unfolding of proteins in signaling.

Authors:  Diana M Mitrea; Richard W Kriwacki
Journal:  FEBS Lett       Date:  2013-02-20       Impact factor: 4.124

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