Literature DB >> 32931253

Specificity Distorted: Chemical Induction of Biological Paracatalysis.

Brian P Callahan1, Daniel A Ciulla1, Andrew G Wagner1, Zihan Xu1, Xiaoyu Zhang1.   

Abstract

We define paracatalysis as the acceleration of a reaction that appears abnormal or nonphysiological. With the high specificity of enzymes, side reactivity of this kind is typically negligible. However, enzyme paracatalysis can be amplified to levels that are biologically significant through interactions with a special class of small molecule "antagonist", here termed a paracatalytic inducer. Compounds with this unusual mode of action tend to be natural products, identified by chance through phenotypic screens. In this Perspective, we suggest two general types of paracatalytic inducer. The first type promotes substrate ambiguity, where the enzyme's ground state selectivity is compromised, enabling the transformation of non-native substrates. The second type involves transition state ambiguity, where the paracatalytic inducer changes the enzyme's interactions with the activated substrate, giving rise to non-native bond making. Although they are unusual, small molecules that induce paracatalysis have established value as hypothesis-generating probes and a few substances, i.e., aspirin and the aminoglycosides, have proven to be translatable as medicines.

Entities:  

Year:  2020        PMID: 32931253      PMCID: PMC7558459          DOI: 10.1021/acs.biochem.0c00643

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  55 in total

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Journal:  Nat Struct Biol       Date:  2000-02

Review 2.  Control of oxygenation in lipoxygenase and cyclooxygenase catalysis.

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4.  The aspirin and heme-binding sites of ovine and murine prostaglandin endoperoxide synthases.

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5.  Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. The effect of drug concentration.

Authors:  J Davies; B D Davis
Journal:  J Biol Chem       Date:  1968-06-25       Impact factor: 5.157

6.  ClpX, an alternative subunit for the ATP-dependent Clp protease of Escherichia coli. Sequence and in vivo activities.

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Journal:  J Biol Chem       Date:  1993-10-25       Impact factor: 5.157

Review 7.  Enzymatic synthesis of cyclic triterpenes.

Authors:  Ikuro Abe
Journal:  Nat Prod Rep       Date:  2007-08-07       Impact factor: 13.423

8.  Divergent evolution of function in the ROK sugar kinase superfamily: role of enzyme loops in substrate specificity.

Authors:  Mioara Larion; Lauren B Moore; Steven M Thompson; Brian G Miller
Journal:  Biochemistry       Date:  2007-11-03       Impact factor: 3.162

9.  Prostaglandin endoperoxides. Novel transformations of arachidonic acid in human platelets.

Authors:  M Hamberg; B Samuelsson
Journal:  Proc Natl Acad Sci U S A       Date:  1974-09       Impact factor: 11.205

10.  ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores.

Authors:  Mark F Mabanglo; Elisa Leung; Siavash Vahidi; Thiago V Seraphim; Bryan T Eger; Steve Bryson; Vaibhav Bhandari; Jin Lin Zhou; Yu-Qian Mao; Kamran Rizzolo; Marim M Barghash; Jordan D Goodreid; Sadhna Phanse; Mohan Babu; Leandro R S Barbosa; Carlos H I Ramos; Robert A Batey; Lewis E Kay; Emil F Pai; Walid A Houry
Journal:  Commun Biol       Date:  2019-11-13
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  1 in total

Review 1.  Reprogramming of the Caseinolytic Protease by ADEP Antibiotics: Molecular Mechanism, Cellular Consequences, Therapeutic Potential.

Authors:  Heike Brötz-Oesterhelt; Andreas Vorbach
Journal:  Front Mol Biosci       Date:  2021-05-13
  1 in total

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