Literature DB >> 15454077

Sculpting the proteome with AAA(+) proteases and disassembly machines.

Robert T Sauer1, Daniel N Bolon, Briana M Burton, Randall E Burton, Julia M Flynn, Robert A Grant, Greg L Hersch, Shilpa A Joshi, Jon A Kenniston, Igor Levchenko, Saskia B Neher, Elizabeth S C Oakes, Samia M Siddiqui, David A Wah, Tania A Baker.   

Abstract

Machines of protein destruction-including energy-dependent proteases and disassembly chaperones of the AAA(+) ATPase family-function in all kingdoms of life to sculpt the cellular proteome, ensuring that unnecessary and dangerous proteins are eliminated and biological responses to environmental change are rapidly and properly regulated. Exciting progress has been made in understanding how AAA(+) machines recognize specific proteins as targets and then carry out ATP-dependent dismantling of the tertiary and/or quaternary structure of these molecules during the processes of protein degradation and the disassembly of macromolecular complexes.

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Year:  2004        PMID: 15454077      PMCID: PMC2717008          DOI: 10.1016/j.cell.2004.09.020

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  76 in total

1.  Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH.

Authors:  Christophe Herman; Sumit Prakash; Chi Zen Lu; Andreas Matouschek; Carol A Gross
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

2.  Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals.

Authors:  Julia M Flynn; Saskia B Neher; Yong In Kim; Robert T Sauer; Tania A Baker
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

3.  Energy-dependent degradation: Linkage between ClpX-catalyzed nucleotide hydrolysis and protein-substrate processing.

Authors:  Randall E Burton; Tania A Baker; Robert T Sauer
Journal:  Protein Sci       Date:  2003-05       Impact factor: 6.725

4.  Latent ClpX-recognition signals ensure LexA destruction after DNA damage.

Authors:  Saskia B Neher; Julia M Flynn; Robert T Sauer; Tania A Baker
Journal:  Genes Dev       Date:  2003-05-01       Impact factor: 11.361

5.  Mu transpososome architecture ensures that unfolding by ClpX or proteolysis by ClpXP remodels but does not destroy the complex.

Authors:  Briana M Burton; Tania A Baker
Journal:  Chem Biol       Date:  2003-05

6.  Structural basis of degradation signal recognition by SspB, a specificity-enhancing factor for the ClpXP proteolytic machine.

Authors:  Hyun Kyu Song; Michael J Eck
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

7.  Targeted delivery of an ssrA-tagged substrate by the adaptor protein SspB to its cognate AAA+ protein ClpX.

Authors:  David A Dougan; Eilika Weber-Ban; Bernd Bukau
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

8.  Flexible linkers leash the substrate binding domain of SspB to a peptide module that stabilizes delivery complexes with the AAA+ ClpXP protease.

Authors:  David A Wah; Igor Levchenko; Gabrielle E Rieckhof; Daniel N Bolon; Tania A Baker; Robert T Sauer
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

9.  Structure of a delivery protein for an AAA+ protease in complex with a peptide degradation tag.

Authors:  Igor Levchenko; Robert A Grant; David A Wah; Robert T Sauer; Tania A Baker
Journal:  Mol Cell       Date:  2003-08       Impact factor: 17.970

10.  Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA+ degradation machine.

Authors:  Jon A Kenniston; Tania A Baker; Julio M Fernandez; Robert T Sauer
Journal:  Cell       Date:  2003-08-22       Impact factor: 41.582

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  177 in total

1.  Stress regulation of the PAN-proteasome system in the extreme halophilic archaeon Halobacterium.

Authors:  H Chamieh; V Marty; D Guetta; A Perollier; B Franzetti
Journal:  Extremophiles       Date:  2012-01-04       Impact factor: 2.395

Review 2.  Ratcheting up protein translocation with anthrax toxin.

Authors:  Geoffrey K Feld; Michael J Brown; Bryan A Krantz
Journal:  Protein Sci       Date:  2012-03-30       Impact factor: 6.725

3.  CtsR, the Gram-positive master regulator of protein quality control, feels the heat.

Authors:  Alexander K W Elsholz; Stephan Michalik; Daniela Zühlke; Michael Hecker; Ulf Gerth
Journal:  EMBO J       Date:  2010-09-17       Impact factor: 11.598

4.  Crystal structure of Lon protease: molecular architecture of gated entry to a sequestered degradation chamber.

Authors:  Sun-Shin Cha; Young Jun An; Chang Ro Lee; Hyun Sook Lee; Yeon-Gil Kim; Sang Jin Kim; Kae Kyoung Kwon; Gian Marco De Donatis; Jung-Hyun Lee; Michael R Maurizi; Sung Gyun Kang
Journal:  EMBO J       Date:  2010-09-10       Impact factor: 11.598

5.  A common substrate recognition mode conserved between katanin p60 and VPS4 governs microtubule severing and membrane skeleton reorganization.

Authors:  Naoko Iwaya; Yohta Kuwahara; Yoshie Fujiwara; Natsuko Goda; Takeshi Tenno; Kohei Akiyama; Shogo Mase; Hidehito Tochio; Takahisa Ikegami; Masahiro Shirakawa; Hidekazu Hiroaki
Journal:  J Biol Chem       Date:  2010-03-25       Impact factor: 5.157

6.  Walker-A threonine couples nucleotide occupancy with the chaperone activity of the AAA+ ATPase ClpB.

Authors:  Maria Nagy; Hui-Chuan Wu; Zhonghua Liu; Sabina Kedzierska-Mieszkowska; Michal Zolkiewski
Journal:  Protein Sci       Date:  2009-02       Impact factor: 6.725

7.  An Iterative, Synthetic Approach To Engineer a High-Performance PhoB-Specific Reporter.

Authors:  Julie L Stoudenmire; Tara Essock-Burns; Erena N Weathers; Sina Solaimanpour; Jan Mrázek; Eric V Stabb
Journal:  Appl Environ Microbiol       Date:  2018-07-02       Impact factor: 4.792

8.  The YjbH protein of Bacillus subtilis enhances ClpXP-catalyzed proteolysis of Spx.

Authors:  Saurabh K Garg; Sushma Kommineni; Luke Henslee; Ying Zhang; Peter Zuber
Journal:  J Bacteriol       Date:  2008-12-12       Impact factor: 3.490

9.  Ligand binding modulates the mechanical stability of dihydrofolate reductase.

Authors:  Sri Rama Koti Ainavarapu; Lewyn Li; Carmen L Badilla; Julio M Fernandez
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

10.  A reversible and highly selective inhibitor of the proteasomal ubiquitin receptor rpn13 is toxic to multiple myeloma cells.

Authors:  Darci J Trader; Scott Simanski; Thomas Kodadek
Journal:  J Am Chem Soc       Date:  2015-05-08       Impact factor: 15.419

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