Literature DB >> 21730956

Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment.

Joel E Graham1, Melinda E Clark, Dana C Nadler, Sarah Huffer, Harshal A Chokhawala, Sara E Rowland, Harvey W Blanch, Douglas S Clark, Frank T Robb.   

Abstract

Despite extensive studies on microbial and enzymatic lignocellulose degradation, relatively few Archaea are known to deconstruct crystalline cellulose. Here we describe a consortium of three hyperthermophilic archaea enriched from a continental geothermal source by growth at 90 °C on crystalline cellulose, representing the first instance of Archaea able to deconstruct lignocellulose optimally above 90 °C. Following metagenomic studies on the consortium, a 90 kDa, multidomain cellulase, annotated as a member of the TIM barrel glycosyl hydrolase superfamily, was characterized. The multidomain architecture of this protein is uncommon for hyperthermophilic endoglucanases, and two of the four domains of the enzyme have no characterized homologues. The recombinant enzyme has optimal activity at 109 °C, a half-life of 5 h at 100 °C, and resists denaturation in strong detergents, high-salt concentrations, and ionic liquids. Cellulases active above 100 °C may assist in biofuel production from lignocellulosic feedstocks by hydrolysing cellulose under conditions typically employed in biomass pretreatment.

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Year:  2011        PMID: 21730956     DOI: 10.1038/ncomms1373

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  27 in total

1.  Classification of glycoside hydrolases and glycosyltransferases from hyperthermophiles.

Authors:  B Henrissat; P M Coutinho
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

Review 2.  Cellulose, cellulases and cellulosomes.

Authors:  E A Bayer; H Chanzy; R Lamed; Y Shoham
Journal:  Curr Opin Struct Biol       Date:  1998-10       Impact factor: 6.809

3.  Ionic liquid pretreatment of cellulosic biomass: enzymatic hydrolysis and ionic liquid recycle.

Authors:  Kierston Shill; Sasisanker Padmanabhan; Qin Xin; John M Prausnitz; Douglas S Clark; Harvey W Blanch
Journal:  Biotechnol Bioeng       Date:  2010-12-22       Impact factor: 4.530

Review 4.  Fluorophore-assisted carbohydrate electrophoresis: a sensitive and accurate method for the direct analysis of dolichol pyrophosphate-linked oligosaccharides in cell cultures and tissues.

Authors:  Ningguo Gao
Journal:  Methods       Date:  2005-04       Impact factor: 3.608

5.  Cloning and functional characterization of a novel endo-β-1,4-glucanase gene from a soil-derived metagenomic library.

Authors:  Juan Liu; Wei-Dong Liu; Xiao-Li Zhao; Wen-Jing Shen; Hui Cao; Zhong-Li Cui
Journal:  Appl Microbiol Biotechnol       Date:  2010-10-12       Impact factor: 4.813

6.  Cellulose hydrolysis under extremely low sulfuric acid and high-temperature conditions.

Authors:  J S Kim; Y Y Lee; R W Torget
Journal:  Appl Biochem Biotechnol       Date:  2001       Impact factor: 2.926

7.  Protein production by auto-induction in high density shaking cultures.

Authors:  F William Studier
Journal:  Protein Expr Purif       Date:  2005-05       Impact factor: 1.650

8.  Jalview Version 2--a multiple sequence alignment editor and analysis workbench.

Authors:  Andrew M Waterhouse; James B Procter; David M A Martin; Michèle Clamp; Geoffrey J Barton
Journal:  Bioinformatics       Date:  2009-01-16       Impact factor: 6.937

9.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

10.  NCBI BLAST: a better web interface.

Authors:  Mark Johnson; Irena Zaretskaya; Yan Raytselis; Yuri Merezhuk; Scott McGinnis; Thomas L Madden
Journal:  Nucleic Acids Res       Date:  2008-04-24       Impact factor: 16.971

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  35 in total

1.  Turning up the heat on biomass degradation.

Authors:  Andrew Jermy
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

Review 2.  The biology and biotechnology of the genus Caldicellulosiruptor: recent developments in 'Caldi World'.

Authors:  Laura L Lee; James R Crosby; Gabriel M Rubinstein; Tunyaboon Laemthong; Ryan G Bing; Christopher T Straub; Michael W W Adams; Robert M Kelly
Journal:  Extremophiles       Date:  2019-07-29       Impact factor: 2.395

3.  Extreme Thermophiles: Moving beyond single-enzyme biocatalysis.

Authors:  Andrew D Frock; Robert M Kelly
Journal:  Curr Opin Chem Eng       Date:  2012-11-12       Impact factor: 5.163

Review 4.  Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy.

Authors:  Stanley T C Nguyen; Hannah L Freund; Joshua Kasanjian; Renaud Berlemont
Journal:  Appl Microbiol Biotechnol       Date:  2018-01-22       Impact factor: 4.813

5.  Characterization and homology modelling of a novel multi-modular and multi-functional Paenibacillus mucilaginosus glycoside hydrolase.

Authors:  Ntsoaki Leticia Mosina; Wolf-Dieter Schubert; Don A Cowan
Journal:  Extremophiles       Date:  2019-08-01       Impact factor: 2.395

6.  Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses.

Authors:  Laura L Lee; Sara E Blumer-Schuette; Javier A Izquierdo; Jeffrey V Zurawski; Andrew J Loder; Jonathan M Conway; James G Elkins; Mircea Podar; Alicia Clum; Piet C Jones; Marek J Piatek; Deborah A Weighill; Daniel A Jacobson; Michael W W Adams; Robert M Kelly
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

Review 7.  Destructuring plant biomass: focus on fungal and extremophilic cell wall hydrolases.

Authors:  Gea Guerriero; Jean-Francois Hausman; Joseph Strauss; Haluk Ertan; Khawar Sohail Siddiqui
Journal:  Plant Sci       Date:  2015-02-25       Impact factor: 4.729

8.  Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5).

Authors:  Henrik Aspeborg; Pedro M Coutinho; Yang Wang; Harry Brumer; Bernard Henrissat
Journal:  BMC Evol Biol       Date:  2012-09-20       Impact factor: 3.260

9.  Pyrosequencing reveals high-temperature cellulolytic microbial consortia in Great Boiling Spring after in situ lignocellulose enrichment.

Authors:  Joseph P Peacock; Jessica K Cole; Senthil K Murugapiran; Jeremy A Dodsworth; Jenny C Fisher; Duane P Moser; Brian P Hedlund
Journal:  PLoS One       Date:  2013-03-29       Impact factor: 3.240

10.  Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions.

Authors:  Shara D McClendon; Tanveer Batth; Christopher J Petzold; Paul D Adams; Blake A Simmons; Steven W Singer
Journal:  Biotechnol Biofuels       Date:  2012-07-28       Impact factor: 6.040

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