Literature DB >> 21728134

ADAR proteins: double-stranded RNA and Z-DNA binding domains.

Pierre Barraud1, Frédéric H-T Allain.   

Abstract

Adenosine deaminases acting on RNA (ADAR) catalyze adenosine to inosine editing within double-stranded RNA (dsRNA) substrates. Inosine is read as a guanine by most cellular processes and therefore these changes create codons for a different amino acid, stop codons or even a new splice-site allowing protein diversity generated from a single gene. We review here the current structural and molecular knowledge on RNA editing by the ADAR family of protein. We focus especially on two types of nucleic acid binding domains present in ADARs, namely the dsRNA and Z-DNA binding domains.

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Year:  2012        PMID: 21728134      PMCID: PMC3226063          DOI: 10.1007/82_2011_145

Source DB:  PubMed          Journal:  Curr Top Microbiol Immunol        ISSN: 0070-217X            Impact factor:   4.291


  123 in total

1.  Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette.

Authors:  A Gerber; M A O'Connell; W Keller
Journal:  RNA       Date:  1997-05       Impact factor: 4.942

Review 2.  Biased (A-->I) hypermutation of animal RNA virus genomes.

Authors:  R Cattaneo
Journal:  Curr Opin Genet Dev       Date:  1994-12       Impact factor: 5.578

3.  RED2, a brain-specific member of the RNA-specific adenosine deaminase family.

Authors:  T Melcher; S Maas; A Herb; R Sprengel; M Higuchi; P H Seeburg
Journal:  J Biol Chem       Date:  1996-12-13       Impact factor: 5.157

4.  Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases.

Authors:  F Lai; C X Chen; K C Carter; K Nishikura
Journal:  Mol Cell Biol       Date:  1997-05       Impact factor: 4.272

5.  Structural requirements for RNA editing in glutamate receptor pre-mRNAs by recombinant double-stranded RNA adenosine deaminase.

Authors:  S Maas; T Melcher; A Herb; P H Seeburg; W Keller; S Krause; M Higuchi; M A O'Connell
Journal:  J Biol Chem       Date:  1996-05-24       Impact factor: 5.157

6.  Molecular cloning of cDNA for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing.

Authors:  U Kim; Y Wang; T Sanford; Y Zeng; K Nishikura
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-22       Impact factor: 11.205

7.  Structure of the P1 helix from group I self-splicing introns.

Authors:  F H Allain; G Varani
Journal:  J Mol Biol       Date:  1995-07-14       Impact factor: 5.469

8.  RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase.

Authors:  A G Polson; B L Bass; J L Casey
Journal:  Nature       Date:  1996-04-04       Impact factor: 49.962

9.  Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase.

Authors:  M A O'Connell; S Krause; M Higuchi; J J Hsuan; N F Totty; A Jenny; W Keller
Journal:  Mol Cell Biol       Date:  1995-03       Impact factor: 4.272

10.  Preferential selection of adenosines for modification by double-stranded RNA adenosine deaminase.

Authors:  A G Polson; B L Bass
Journal:  EMBO J       Date:  1994-12-01       Impact factor: 11.598

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  43 in total

1.  Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR2.

Authors:  Soh Ishiguro; Josephine Galipon; Rintaro Ishii; Yutaka Suzuki; Shinji Kondo; Mariko Okada-Hatakeyama; Masaru Tomita; Kumiko Ui-Tei
Journal:  RNA Biol       Date:  2018-07-24       Impact factor: 4.652

Review 2.  Metabolite sensing in eukaryotic mRNA biology.

Authors:  Carina C Clingman; Sean P Ryder
Journal:  Wiley Interdiscip Rev RNA       Date:  2013-05-07       Impact factor: 9.957

Review 3.  ADARs: viruses and innate immunity.

Authors:  Charles E Samuel
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

Review 4.  Functions of double-stranded RNA-binding domains in nucleocytoplasmic transport.

Authors:  Silpi Banerjee; Pierre Barraud
Journal:  RNA Biol       Date:  2014       Impact factor: 4.652

Review 5.  RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence.

Authors:  Grégoire Masliah; Pierre Barraud; Frédéric H-T Allain
Journal:  Cell Mol Life Sci       Date:  2012-08-24       Impact factor: 9.261

Review 6.  'Black sheep' that don't leave the double-stranded RNA-binding domain fold.

Authors:  Michael L Gleghorn; Lynne E Maquat
Journal:  Trends Biochem Sci       Date:  2014-06-19       Impact factor: 13.807

7.  Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript.

Authors:  Emily C Wheeler; Michael C Washburn; Francois Major; Douglas B Rusch; Heather A Hundley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

8.  A-to-I RNA editing independent of ADARs in filamentous fungi.

Authors:  Chenfang Wang; Jin-Rong Xu; Huiquan Liu
Journal:  RNA Biol       Date:  2016-08-17       Impact factor: 4.652

9.  Enzymatic interconversion of isomorphic fluorescent nucleosides: adenosine deaminase transforms an adenosine analogue into an inosine analogue.

Authors:  Renatus W Sinkeldam; Lisa S McCoy; Dongwon Shin; Yitzhak Tor
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-29       Impact factor: 15.336

Review 10.  How RNA-Binding Proteins Interact with RNA: Molecules and Mechanisms.

Authors:  Meredith Corley; Margaret C Burns; Gene W Yeo
Journal:  Mol Cell       Date:  2020-04-02       Impact factor: 17.970

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