Literature DB >> 24954387

'Black sheep' that don't leave the double-stranded RNA-binding domain fold.

Michael L Gleghorn1, Lynne E Maquat2.   

Abstract

The canonical double-stranded RNA (dsRNA)-binding domain (dsRBD) is composed of an α1-β1-β2-β3-α2 secondary structure that folds in three dimensions to recognize dsRNA. Recently, structural and functional studies of divergent dsRBDs revealed adaptations that include intra- and/or intermolecular protein interactions, sometimes in the absence of detectable dsRNA-binding ability. We describe here how discrete dsRBD components can accommodate pronounced amino-acid sequence changes while maintaining the core fold. We exemplify the growing importance of divergent dsRBDs in mRNA decay by discussing Dicer, Staufen (STAU)1 and 2, trans-activation responsive RNA-binding protein (TARBP)2, protein activator of protein kinase RNA-activated (PKR) (PACT), DiGeorge syndrome critical region (DGCR)8, DEAH box helicase proteins (DHX) 9 and 30, and dsRBD-like fold-containing proteins that have ribosome-related functions. We also elaborate on the computational limitations to discovering yet-to-be-identified divergent dsRBDs.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA metabolism; degenerate dsRBDs; divergent dsRBDs; double-stranded RNA-binding domain; dsRBD–protein interactions; mRNA decay

Mesh:

Substances:

Year:  2014        PMID: 24954387      PMCID: PMC4077987          DOI: 10.1016/j.tibs.2014.05.003

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


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