Literature DB >> 21708298

Biomarkers of disease and post-mortem changes - Heat stabilization, a necessary tool for measurement of protein regulation.

Kim Kultima1, Karl Sköld, Mats Borén.   

Abstract

This review focuses on post sampling changes and how the Stabilizor system has been used to control this natural biological process and potential implications on cancer-specific biomarkers due to post sampling changes. Tissue sampling is a major traumatic event that can have drastic effects within a very short timeframe at the molecular level [1] resulting in loss of sample quality due to post-mortem changes. A heat-stabilization technology, using the Stabilizor system, has been developed to quickly and permanently abolish the enzymatic activity that causes these changes post-sampling and so preserve sample quality. The Stabilizor system has been shown to give better sample quality when analyzing a variety of tissues in various proteomic workflows. In this paper we discuss the impact of using heat-stabilized tissue in different proteomic applications. Based on our observations regarding the overlap between commonly changing proteins and proteins found to change post-mortem we also highlight a group of proteins of particular interest in cancer studies.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21708298     DOI: 10.1016/j.jprot.2011.06.009

Source DB:  PubMed          Journal:  J Proteomics        ISSN: 1874-3919            Impact factor:   4.044


  9 in total

Review 1.  Evolution of the liver biopsy and its future.

Authors:  Dhanpat Jain; Richard Torres; Romulo Celli; Jeremy Koelmel; Georgia Charkoftaki; Vasilis Vasiliou
Journal:  Transl Gastroenterol Hepatol       Date:  2021-04-05

2.  Improved identification and quantitation of mature endogenous peptides in the rodent hypothalamus using a rapid conductive sample heating system.

Authors:  Ning Yang; Krishna D B Anapindi; Elena V Romanova; Stanislav S Rubakhin; Jonathan V Sweedler
Journal:  Analyst       Date:  2017-11-20       Impact factor: 4.616

3.  Rapid Inactivation of Non-Endospore-Forming Bacterial Pathogens by Heat Stabilization is Compatible with Downstream Next-Generation Sequencing.

Authors:  Max R Schroeder; Vladimir Loparev
Journal:  Appl Biosaf       Date:  2019-09-01

Review 4.  The impact of biosampling procedures on molecular data interpretation.

Authors:  Karl Sköld; Henrik Alm; Birger Scholz
Journal:  Mol Cell Proteomics       Date:  2013-02-04       Impact factor: 5.911

5.  Heat stabilization of blood spot samples for determination of metabolically unstable drug compounds.

Authors:  Daniel Blessborn; Karl Sköld; David Zeeberg; Karnrawee Kaewkhao; Olof Sköld; Martin Ahnoff
Journal:  Bioanalysis       Date:  2013-01       Impact factor: 2.681

6.  An optimized MALDI MSI protocol for spatial detection of tryptic peptides in fresh frozen prostate tissue.

Authors:  Therese S Høiem; Maria K Andersen; Marta Martin-Lorenzo; Rémi Longuespée; Britt S R Claes; Anna Nordborg; Frédéric Dewez; Benjamin Balluff; Marco Giampà; Animesh Sharma; Lars Hagen; Ron M A Heeren; Tone F Bathen; Guro F Giskeødegård; Sebastian Krossa; May-Britt Tessem
Journal:  Proteomics       Date:  2022-03-03       Impact factor: 5.393

7.  Heat fixation inactivates viral and bacterial pathogens and is compatible with downstream MALDI mass spectrometry tissue imaging.

Authors:  Lisa H Cazares; Sean A Van Tongeren; Julie Costantino; Tara Kenny; Nicole L Garza; Ginger Donnelly; Douglas Lane; Rekha G Panchal; Sina Bavari
Journal:  BMC Microbiol       Date:  2015-05-13       Impact factor: 3.605

8.  Minimizing Postsampling Degradation of Peptides by a Thermal Benchtop Tissue Stabilization Method.

Authors:  Lova Segerström; Jenny Gustavsson; Ingrid Nylander
Journal:  Biopreserv Biobank       Date:  2016-03-23       Impact factor: 2.300

9.  qPCR based mRNA quality score show intact mRNA after heat stabilization.

Authors:  Oskar Karlsson; Lova Segerström; Robert Sjöback; Ingrid Nylander; Mats Borén
Journal:  Biomol Detect Quantif       Date:  2016-02-10
  9 in total

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