Literature DB >> 21700215

Measuring in vivo protein half-life.

Karolina Bojkowska1, Francesca Santoni de Sio, Isabelle Barde, Sandra Offner, Sonia Verp, Christian Heinis, Kai Johnsson, Didier Trono.   

Abstract

Protein turnover critically influences many biological functions, yet methods have been lacking to assess this parameter in vivo. Here, we demonstrate how chemical labeling of SNAP-tag fusion proteins can be exploited to measure the half-life of resident intracellular and extracellular proteins in living mice. First, we demonstrate that SNAP-tag substrates have wide bioavailability in mice and can be used for the specific in vivo labeling of SNAP-tag fusion proteins. We then apply near-infrared probes to perform noninvasive imaging of in vivo-labeled tumors. Finally, we use SNAP-mediated chemical pulse-chase labeling to perform measurement of the in vivo half-life of different extra- and intracellular proteins. These results open broad perspectives for studying protein function in living animals.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21700215     DOI: 10.1016/j.chembiol.2011.03.014

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  25 in total

1.  Targeting diverse signaling interaction sites allows the rapid generation of bivalent kinase inhibitors.

Authors:  Zachary B Hill; B Gayani K Perera; Simeon S Andrews; Dustin J Maly
Journal:  ACS Chem Biol       Date:  2011-12-22       Impact factor: 5.100

2.  Genetic targeting of chemical indicators in vivo.

Authors:  Guoying Yang; Fernanda de Castro Reis; Mayya Sundukova; Sofia Pimpinella; Antonino Asaro; Laura Castaldi; Laura Batti; Daniel Bilbao; Luc Reymond; Kai Johnsson; Paul A Heppenstall
Journal:  Nat Methods       Date:  2014-12-08       Impact factor: 28.547

Review 3.  Dynamics of protein synthesis and degradation through the cell cycle.

Authors:  Andrea Brigitta Alber; David Michael Suter
Journal:  Cell Cycle       Date:  2019-03-30       Impact factor: 4.534

4.  Photo-SNAP-tag, a Light-Regulated Chemical Labeling System.

Authors:  Joseph D Cleveland; Chandra L Tucker
Journal:  ACS Chem Biol       Date:  2020-07-16       Impact factor: 5.100

5.  Evaluation of fluorophores to label SNAP-tag fused proteins for multicolor single-molecule tracking microscopy in live cells.

Authors:  Peter J Bosch; Ivan R Corrêa; Michael H Sonntag; Jenny Ibach; Luc Brunsveld; Johannes S Kanger; Vinod Subramaniam
Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

6.  Roles for trafficking and O-linked glycosylation in the turnover of model cell surface proteins.

Authors:  Darya Karabasheva; Nelson B Cole; Julie G Donaldson
Journal:  J Biol Chem       Date:  2014-06-02       Impact factor: 5.157

7.  A reference-based protein degradation assay without global translation inhibitors.

Authors:  Jang-Hyun Oh; Shun-Jia Chen; Alexander Varshavsky
Journal:  J Biol Chem       Date:  2017-11-09       Impact factor: 5.157

8.  Single-Cell Quantification of Protein Degradation Rates by Time-Lapse Fluorescence Microscopy in Adherent Cell Culture.

Authors:  Andrea Brigitta Alber; David Michael Suter
Journal:  J Vis Exp       Date:  2018-02-04       Impact factor: 1.355

Review 9.  Advances in fluorescence labeling strategies for dynamic cellular imaging.

Authors:  Kevin M Dean; Amy E Palmer
Journal:  Nat Chem Biol       Date:  2014-07       Impact factor: 15.040

Review 10.  Chemical Biology Framework to Illuminate Proteostasis.

Authors:  Rebecca M Sebastian; Matthew D Shoulders
Journal:  Annu Rev Biochem       Date:  2020-02-25       Impact factor: 23.643

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