Literature DB >> 32097570

Chemical Biology Framework to Illuminate Proteostasis.

Rebecca M Sebastian1, Matthew D Shoulders1.   

Abstract

Protein folding in the cell is mediated by an extensive network of >1,000 chaperones, quality control factors, and trafficking mechanisms collectively termed the proteostasis network. While the components and organization of this network are generally well established, our understanding of how protein-folding problems are identified, how the network components integrate to successfully address challenges, and what types of biophysical issues each proteostasis network component is capable of addressing remains immature. We describe a chemical biology-informed framework for studying cellular proteostasis that relies on selection of interesting protein-folding problems and precise researcher control of proteostasis network composition and activities. By combining these methods with multifaceted strategies to monitor protein folding, degradation, trafficking, and aggregation in cells, researchers continue to rapidly generate new insights into cellular proteostasis.

Entities:  

Keywords:  aggregation; cellular protein folding; heat shock response; protein-misfolding stress response; quality control; unfolded protein response

Mesh:

Substances:

Year:  2020        PMID: 32097570      PMCID: PMC7311290          DOI: 10.1146/annurev-biochem-013118-111552

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  151 in total

Review 1.  Targeting defective proteostasis in the collagenopathies.

Authors:  Madeline Y Wong; Matthew D Shoulders
Journal:  Curr Opin Chem Biol       Date:  2019-04-24       Impact factor: 8.822

Review 2.  Adapting Secretory Proteostasis and Function Through the Unfolded Protein Response.

Authors:  Madeline Y Wong; Andrew S DiChiara; Patreece H Suen; Kenny Chen; Ngoc-Duc Doan; Matthew D Shoulders
Journal:  Curr Top Microbiol Immunol       Date:  2018       Impact factor: 4.291

Review 3.  Heat Shock Proteins Promote Cancer: It's a Protection Racket.

Authors:  Stuart K Calderwood; Jianlin Gong
Journal:  Trends Biochem Sci       Date:  2016-02-11       Impact factor: 13.807

4.  No-wash protein labeling with designed fluorogenic probes and application to real-time pulse-chase analysis.

Authors:  Shin Mizukami; Shuji Watanabe; Yuri Akimoto; Kazuya Kikuchi
Journal:  J Am Chem Soc       Date:  2012-01-06       Impact factor: 15.419

Review 5.  Proteasome inhibitors in cancer therapy.

Authors:  Elisabet E Manasanch; Robert Z Orlowski
Journal:  Nat Rev Clin Oncol       Date:  2017-01-24       Impact factor: 66.675

6.  Dual role of 3-methyladenine in modulation of autophagy via different temporal patterns of inhibition on class I and III phosphoinositide 3-kinase.

Authors:  You-Tong Wu; Hui-Ling Tan; Guanghou Shui; Chantal Bauvy; Qing Huang; Markus R Wenk; Choon-Nam Ong; Patrice Codogno; Han-Ming Shen
Journal:  J Biol Chem       Date:  2010-02-01       Impact factor: 5.157

7.  ER-to-lysosome-associated degradation of proteasome-resistant ATZ polymers occurs via receptor-mediated vesicular transport.

Authors:  Ilaria Fregno; Elisa Fasana; Timothy J Bergmann; Andrea Raimondi; Marisa Loi; Tatiana Soldà; Carmela Galli; Rocco D'Antuono; Diego Morone; Alberto Danieli; Paolo Paganetti; Eelco van Anken; Maurizio Molinari
Journal:  EMBO J       Date:  2018-08-03       Impact factor: 11.598

8.  Divergent allosteric control of the IRE1α endoribonuclease using kinase inhibitors.

Authors:  Likun Wang; B Gayani K Perera; Sanjay B Hari; Barun Bhhatarai; Bradley J Backes; Markus A Seeliger; Stephan C Schürer; Scott A Oakes; Feroz R Papa; Dustin J Maly
Journal:  Nat Chem Biol       Date:  2012-10-21       Impact factor: 15.040

9.  Conformational maturation of CFTR but not its mutant counterpart (delta F508) occurs in the endoplasmic reticulum and requires ATP.

Authors:  G L Lukacs; A Mohamed; N Kartner; X B Chang; J R Riordan; S Grinstein
Journal:  EMBO J       Date:  1994-12-15       Impact factor: 11.598

10.  Regulated Ire1-dependent decay of messenger RNAs in mammalian cells.

Authors:  Julie Hollien; Jonathan H Lin; Han Li; Nicole Stevens; Peter Walter; Jonathan S Weissman
Journal:  J Cell Biol       Date:  2009-08-03       Impact factor: 10.539

View more
  8 in total

1.  HSF1 Activation Can Restrict HIV Replication.

Authors:  Emmanuel E Nekongo; Anna I Ponomarenko; Mahender B Dewal; Vincent L Butty; Edward P Browne; Matthew D Shoulders
Journal:  ACS Infect Dis       Date:  2020-06-10       Impact factor: 5.084

2.  Measuring Cysteine Exposure in Unfolded Proteins with Tetraphenylethene Maleimide and its Analogs.

Authors:  Shouxiang Zhang; Yuning Hong
Journal:  Methods Mol Biol       Date:  2022

3.  Thermal Proteome Profiling Reveals the O-GlcNAc-Dependent Meltome.

Authors:  Dustin T King; Jesús E Serrano-Negrón; Yanping Zhu; Christopher L Moore; Matthew D Shoulders; Leonard J Foster; David J Vocadlo
Journal:  J Am Chem Soc       Date:  2022-03-01       Impact factor: 15.419

4.  Elucidation of proteostasis defects caused by osteogenesis imperfecta mutations in the collagen-α2(I) C-propeptide domain.

Authors:  Ngoc-Duc Doan; Azade S Hosseini; Agata A Bikovtseva; Michelle S Huang; Andrew S DiChiara; Louis J Papa; Antonius Koller; Matthew D Shoulders
Journal:  J Biol Chem       Date:  2020-06-01       Impact factor: 5.157

Review 5.  Directed evolution in mammalian cells.

Authors:  Samuel J Hendel; Matthew D Shoulders
Journal:  Nat Methods       Date:  2021-04-07       Impact factor: 28.547

6.  The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope.

Authors:  Jimin Yoon; Emmanuel E Nekongo; Jessica E Patrick; Tiffani Hui; Angela M Phillips; Anna I Ponomarenko; Samuel J Hendel; Rebecca M Sebastian; Yu Meng Zhang; Vincent L Butty; C Brandon Ogbunugafor; Yu-Shan Lin; Matthew D Shoulders
Journal:  PLoS Biol       Date:  2022-02-18       Impact factor: 8.029

Review 7.  The molecular basis of cereal grain proteostasis.

Authors:  Hui Cao; Owen Duncan; A Harvey Millar
Journal:  Essays Biochem       Date:  2022-08-05       Impact factor: 7.258

Review 8.  Co-Chaperones in Targeting and Delivery of Misfolded Proteins to the 26S Proteasome.

Authors:  Amanda B Abildgaard; Sarah K Gersing; Sven Larsen-Ledet; Sofie V Nielsen; Amelie Stein; Kresten Lindorff-Larsen; Rasmus Hartmann-Petersen
Journal:  Biomolecules       Date:  2020-08-04
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.